Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   AAB109_RS26150 Genome accession   NZ_CP151780
Coordinates   4999154..4999516 (-) Length   120 a.a.
NCBI ID   WP_016765913.1    Uniprot ID   A0A1I2XGS5
Organism   Priestia megaterium strain IMGN6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4994154..5004516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAB109_RS26140 (AAB109_26140) - 4994643..4997273 (+) 2631 WP_043977456.1 DEAD/DEAH box helicase -
  AAB109_RS26145 (AAB109_26145) - 4997571..4998617 (+) 1047 WP_043977459.1 C40 family peptidase -
  AAB109_RS26150 (AAB109_26150) ssbB 4999154..4999516 (-) 363 WP_016765913.1 single-stranded DNA-binding protein Machinery gene
  AAB109_RS26155 (AAB109_26155) - 4999613..5000050 (+) 438 WP_014457773.1 YwpF-like family protein -
  AAB109_RS26160 (AAB109_26160) - 5000574..5000996 (+) 423 WP_034648293.1 helix-turn-helix transcriptional regulator -
  AAB109_RS26165 (AAB109_26165) fabZ 5001025..5001459 (-) 435 WP_013059788.1 3-hydroxyacyl-ACP dehydratase FabZ -
  AAB109_RS26170 (AAB109_26170) - 5001543..5002364 (-) 822 WP_322552505.1 flagellar hook-basal body protein -
  AAB109_RS26175 (AAB109_26175) - 5002388..5003212 (-) 825 WP_322552506.1 flagellar hook-basal body protein -
  AAB109_RS26180 (AAB109_26180) - 5003327..5004328 (-) 1002 WP_013085455.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13472.19 Da        Isoelectric Point: 7.1647

>NTDB_id=980879 AAB109_RS26150 WP_016765913.1 4999154..4999516(-) (ssbB) [Priestia megaterium strain IMGN6]
MINHIVLVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSGFSSFDSNQQEE

Nucleotide


Download         Length: 363 bp        

>NTDB_id=980879 AAB109_RS26150 WP_016765913.1 4999154..4999516(-) (ssbB) [Priestia megaterium strain IMGN6]
ATGATTAACCATATTGTTCTTGTAGGAAGACTGACAAAAAAACCTGAGCTTAGATATACCCATGAAGGGATTGCAGTATC
TACTATTACTTTAGCAATTAATCGAACGTTTCGAAATGTGGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACGGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGTGTAGTAGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAACGAGTATATATGACTGACGTTGTGGCTGATGCTGTTAAGTTTTTAAGTGGAAAGCC
ATCCGGTTTTTCTTCATTTGATTCAAATCAACAAGAAGAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I2XGS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.813

89.167

0.533
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

88.333

0.508
  ssb Latilactobacillus sakei subsp. sakei 23K

52.83

88.333

0.467

Multiple sequence alignment