Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   AAFA18_RS01240 Genome accession   NZ_CP151702
Coordinates   254024..254665 (+) Length   213 a.a.
NCBI ID   WP_000201221.1    Uniprot ID   A0A5P1AXR1
Organism   Acinetobacter baumannii strain F19-10-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 249024..259665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFA18_RS01220 (AAFA18_01220) - 249072..249404 (+) 333 WP_000169599.1 hypothetical protein -
  AAFA18_RS01225 (AAFA18_01225) - 249407..250231 (+) 825 WP_002019666.1 putative RNA methyltransferase -
  AAFA18_RS01230 (AAFA18_01230) ponA 250249..252804 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  AAFA18_RS01235 (AAFA18_01235) pilM 252966..254024 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  AAFA18_RS01240 (AAFA18_01240) pilN 254024..254665 (+) 642 WP_000201221.1 PilN domain-containing protein Machinery gene
  AAFA18_RS01245 (AAFA18_01245) pilO 254662..255402 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  AAFA18_RS01250 (AAFA18_01250) pilP 255413..255940 (+) 528 WP_000695061.1 pilus assembly protein PilP Machinery gene
  AAFA18_RS01255 (AAFA18_01255) pilQ 256003..258168 (+) 2166 WP_001017029.1 type IV pilus secretin PilQ family protein Machinery gene
  AAFA18_RS01260 (AAFA18_01260) aroK 258180..258749 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24023.34 Da        Isoelectric Point: 5.3968

>NTDB_id=980202 AAFA18_RS01240 WP_000201221.1 254024..254665(+) (pilN) [Acinetobacter baumannii strain F19-10-4]
MATINLLPWREELREQRKKQFITFCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=980202 AAFA18_RS01240 WP_000201221.1 254024..254665(+) (pilN) [Acinetobacter baumannii strain F19-10-4]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTTTGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGGCTTGTTGATGAGTTAGTTCG
AGTCACGCCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P1AXR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

73.077

97.653

0.714

Multiple sequence alignment