Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ABXH21_RS05440 Genome accession   NZ_AP031472
Coordinates   1193389..1194012 (+) Length   207 a.a.
NCBI ID   WP_353552323.1    Uniprot ID   -
Organism   Moraxella osloensis strain NBRC 115781     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1188389..1199012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXH21_RS05420 (SKB0120_10540) sthA 1188737..1190431 (+) 1695 WP_353552319.1 Si-specific NAD(P)(+) transhydrogenase -
  ABXH21_RS05425 (SKB0120_10550) rsmG 1190431..1191078 (+) 648 WP_353552320.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  ABXH21_RS05430 (SKB0120_10560) - 1191183..1191983 (+) 801 WP_353552321.1 ParA family protein -
  ABXH21_RS05435 (SKB0120_10570) - 1192162..1193325 (+) 1164 WP_353552322.1 ParB/RepB/Spo0J family partition protein -
  ABXH21_RS05440 (SKB0120_10580) exbB 1193389..1194012 (+) 624 WP_353552323.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABXH21_RS05445 (SKB0120_10590) - 1194043..1194498 (+) 456 WP_050325338.1 biopolymer transporter ExbD -
  ABXH21_RS05450 (SKB0120_10600) msbA 1194562..1196325 (+) 1764 WP_353552324.1 lipid A export permease/ATP-binding protein MsbA -
  ABXH21_RS05455 (SKB0120_10610) lpxK 1196325..1197443 (+) 1119 WP_353552325.1 tetraacyldisaccharide 4'-kinase -
  ABXH21_RS05460 (SKB0120_10620) kdsB 1197465..1198259 (+) 795 WP_312538679.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22655.91 Da        Isoelectric Point: 5.9103

>NTDB_id=98017 ABXH21_RS05440 WP_353552323.1 1193389..1194012(+) (exbB) [Moraxella osloensis strain NBRC 115781]
MWELVKAGGWLMWPIVLCSILMLIIIIERAIKLKVSTVTPAHLREQLMQHLIEQGDIDRESLENVKFNSPLGDILAAGLI
NRQHGIDSMTMHMENRASITIHQLEKHINMLGTIGAIAPLLGLLGTVLGIISSFLAITEGAMQDPTMLAAGVSQALITTA
GGMLVAIPAVMAYRIFQRRIIDINAAFEQEAGLMMQELLDNGLITPR

Nucleotide


Download         Length: 624 bp        

>NTDB_id=98017 ABXH21_RS05440 WP_353552323.1 1193389..1194012(+) (exbB) [Moraxella osloensis strain NBRC 115781]
ATGTGGGAATTAGTTAAAGCAGGCGGTTGGTTGATGTGGCCCATTGTCCTATGTTCGATTTTGATGTTAATTATCATCAT
TGAGCGCGCGATAAAACTTAAAGTCAGTACAGTGACACCCGCTCATCTGCGTGAACAATTGATGCAGCATTTGATTGAGC
AGGGCGATATTGATCGTGAATCGCTTGAGAATGTCAAATTCAATTCGCCTTTGGGTGATATCCTCGCTGCAGGACTCATA
AATCGCCAGCATGGAATTGATTCAATGACCATGCATATGGAAAACCGCGCCAGTATCACCATTCACCAATTAGAAAAACA
TATCAATATGCTGGGTACCATCGGTGCTATCGCCCCATTGTTGGGTCTGTTAGGTACCGTACTGGGGATTATTTCATCCT
TCTTAGCCATTACTGAAGGCGCAATGCAAGATCCGACCATGCTGGCAGCTGGCGTATCCCAAGCGCTGATTACCACAGCG
GGGGGTATGCTGGTTGCGATACCTGCAGTGATGGCATACCGTATTTTTCAGCGCCGTATTATTGATATTAATGCGGCGTT
TGAACAAGAAGCGGGTTTGATGATGCAAGAATTACTGGACAATGGTCTAATCACGCCTCGTTAA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(68-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

49.215

92.271

0.454

Multiple sequence alignment