Detailed information
Bioinformatically predicted
Overview
| Name | comA/comEC | Type | Machinery gene |
| Locus tag | AAFA12_RS13540 | Genome accession | NZ_CP151696 |
| Coordinates | 2776375..2778807 (-) | Length | 810 a.a. |
| NCBI ID | WP_000472707.1 | Uniprot ID | A0AAQ0VEX2 |
| Organism | Acinetobacter baumannii strain F19-10-MH12 | ||
| Function | ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2763208..2799617 | 2776375..2778807 | within | 0 |
Gene organization within MGE regions
Location: 2763208..2799617
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAFA12_RS13480 (AAFA12_13480) | - | 2763208..2764140 (-) | 933 | WP_000743272.1 | IS5-like element IS17 family transposase | - |
| AAFA12_RS13485 (AAFA12_13485) | - | 2764191..2766416 (-) | 2226 | Protein_2640 | CSLREA domain-containing protein | - |
| AAFA12_RS13490 (AAFA12_13490) | rbtA | 2766432..2767538 (-) | 1107 | Protein_2641 | rhombotarget A | - |
| AAFA12_RS13495 (AAFA12_13495) | - | 2767591..2768523 (-) | 933 | WP_000743272.1 | IS5-like element IS17 family transposase | - |
| AAFA12_RS13500 (AAFA12_13500) | rbtA | 2768578..2769333 (-) | 756 | Protein_2643 | rhombotarget A | - |
| AAFA12_RS13505 (AAFA12_13505) | hda | 2769650..2770348 (-) | 699 | WP_001249536.1 | DnaA regulatory inactivator Hda | - |
| AAFA12_RS13510 (AAFA12_13510) | cxpE | 2770369..2771562 (-) | 1194 | WP_001153980.1 | chloramphenicol efflux transporter CxpE | - |
| AAFA12_RS13515 (AAFA12_13515) | purM | 2771698..2772768 (+) | 1071 | WP_000071984.1 | phosphoribosylformylglycinamidine cyclo-ligase | - |
| AAFA12_RS13520 (AAFA12_13520) | purN | 2772765..2773394 (+) | 630 | WP_000975532.1 | phosphoribosylglycinamide formyltransferase | - |
| AAFA12_RS13525 (AAFA12_13525) | - | 2773458..2774267 (-) | 810 | WP_000114071.1 | alpha/beta hydrolase | - |
| AAFA12_RS13530 (AAFA12_13530) | sppA | 2774286..2775302 (-) | 1017 | WP_001286615.1 | signal peptide peptidase SppA | - |
| AAFA12_RS13535 (AAFA12_13535) | - | 2775439..2776422 (+) | 984 | WP_001984639.1 | lysophospholipid acyltransferase family protein | - |
| AAFA12_RS13540 (AAFA12_13540) | comA/comEC | 2776375..2778807 (-) | 2433 | WP_000472707.1 | DNA internalization-related competence protein ComEC/Rec2 | Machinery gene |
| AAFA12_RS13545 (AAFA12_13545) | lolD | 2778892..2779578 (-) | 687 | WP_000049406.1 | lipoprotein-releasing ABC transporter ATP-binding protein LolD | - |
| AAFA12_RS13550 (AAFA12_13550) | - | 2779571..2780806 (-) | 1236 | WP_001984636.1 | lipoprotein-releasing ABC transporter permease subunit | - |
| AAFA12_RS13555 (AAFA12_13555) | - | 2780826..2781024 (+) | 199 | Protein_2654 | hypothetical protein | - |
| AAFA12_RS13560 (AAFA12_13560) | - | 2781054..2781962 (-) | 909 | WP_001140071.1 | EamA family transporter | - |
| AAFA12_RS13565 (AAFA12_13565) | - | 2781973..2782458 (-) | 486 | WP_085944104.1 | YaiI/YqxD family protein | - |
| AAFA12_RS13570 (AAFA12_13570) | - | 2782715..2783656 (+) | 942 | WP_000795876.1 | hypothetical protein | - |
| AAFA12_RS13575 (AAFA12_13575) | - | 2783690..2783836 (+) | 147 | WP_000691795.1 | hypothetical protein | - |
| AAFA12_RS13580 (AAFA12_13580) | serC | 2783894..2784973 (-) | 1080 | WP_001203183.1 | 3-phosphoserine/phosphohydroxythreonine transaminase | - |
| AAFA12_RS13585 (AAFA12_13585) | - | 2785353..2786840 (+) | 1488 | WP_001142049.1 | TolC family protein | - |
| AAFA12_RS13590 (AAFA12_13590) | - | 2786853..2787974 (+) | 1122 | WP_001070878.1 | efflux RND transporter periplasmic adaptor subunit | - |
| AAFA12_RS13595 (AAFA12_13595) | - | 2788038..2789108 (+) | 1071 | WP_000258021.1 | ABC transporter permease | - |
| AAFA12_RS13600 (AAFA12_13600) | - | 2789105..2790196 (+) | 1092 | WP_000657716.1 | ABC transporter permease | - |
| AAFA12_RS13605 (AAFA12_13605) | - | 2790461..2791255 (+) | 795 | WP_001140946.1 | ChbG/HpnK family deacetylase | - |
| AAFA12_RS13610 (AAFA12_13610) | - | 2791252..2792232 (+) | 981 | WP_001022413.1 | glycosyltransferase | - |
| AAFA12_RS13615 (AAFA12_13615) | - | 2792232..2792612 (+) | 381 | WP_000494034.1 | GtrA family protein | - |
| AAFA12_RS13620 (AAFA12_13620) | - | 2792622..2793428 (+) | 807 | Protein_2667 | glycosyltransferase family 39 protein | - |
| AAFA12_RS13630 (AAFA12_13630) | - | 2794711..2795553 (+) | 843 | Protein_2669 | dolichyl-phosphate-mannose--protein mannosyltransferase | - |
| AAFA12_RS13635 (AAFA12_13635) | gyrA | 2795604..2798318 (-) | 2715 | WP_000116444.1 | DNA gyrase subunit A | - |
| AAFA12_RS13640 (AAFA12_13640) | - | 2798685..2799617 (-) | 933 | WP_000025985.1 | FAD-binding protein | - |
Sequence
Protein
Download Length: 810 a.a. Molecular weight: 92468.83 Da Isoelectric Point: 8.7672
>NTDB_id=980040 AAFA12_RS13540 WP_000472707.1 2776375..2778807(-) (comA/comEC) [Acinetobacter baumannii strain F19-10-MH12]
MFKIILLGWIGGIALMGIDFPLIMQYEKVGEALLLLAFIFYLYKRPMFVDRPFLKAVFCLLCTTSLFMVGYHYAEKALIE
RLEQRETDTRNLDIIVYINRLSEEKDNKVQQTAQVLNFSKEPVNWLLYLKSNNQNLLKNNQNLELGHYYRISGKTRPAHS
YATPGAFDQEKWFIQRNIMSGFNVRYIEPLSLDEIYRLGYQQHLKEQQSFSNSFRLNIEKLRLTFRQILNSSSLQQKGLI
LALLTGDESLLSDETQLQFKQLGISHLLAISGPHVLIFAIMLSWACHQFISRYYPQIYLWKPKQVLMTVPCCLGVLIYTA
FVGFEIPALRTLLSALIFIGFLLLKQPIKPFTLLVYSASLLLLIDPFSVLSAGFWLSYGACFILLRIYQTIAQLPEQHFL
SLSSKMIFMGKVLIESQGKIFIALSPLTLLFFQQISWVAPLTNIIAVPIVGGVIVPLNIMAACAWFIVKPFGNMLFHFND
MLLSILLSCLGLLEKLSLPLQGISLTPLSLLAISCAIIILFLPKGILPKTWGILCCLPLVIMNKTSQQIQLNILDVGQGQ
AIFLQHPQQNWLIDTGGSYDEKIFSIGQNVVVPFLRQQGVRRLDHVVLSHLDQDHSGAFPIIQQEIPVKQLISNEQLPND
LKQPFQYCHQGQQWHYPELDIQILWPKEKDLAFVTSNQNQYSCVVYLQFKKVGGYQNFLIMGDAGWEAEYELLKDYPNLK
IDVLVLGHHGSKHSSAYDFLATLKPKLAIASAGFDNRYGHPSQQVIARLKALHIPLKSTLEQGTLSFVLENHKLVLHDRR
LDRLWLSRGF
MFKIILLGWIGGIALMGIDFPLIMQYEKVGEALLLLAFIFYLYKRPMFVDRPFLKAVFCLLCTTSLFMVGYHYAEKALIE
RLEQRETDTRNLDIIVYINRLSEEKDNKVQQTAQVLNFSKEPVNWLLYLKSNNQNLLKNNQNLELGHYYRISGKTRPAHS
YATPGAFDQEKWFIQRNIMSGFNVRYIEPLSLDEIYRLGYQQHLKEQQSFSNSFRLNIEKLRLTFRQILNSSSLQQKGLI
LALLTGDESLLSDETQLQFKQLGISHLLAISGPHVLIFAIMLSWACHQFISRYYPQIYLWKPKQVLMTVPCCLGVLIYTA
FVGFEIPALRTLLSALIFIGFLLLKQPIKPFTLLVYSASLLLLIDPFSVLSAGFWLSYGACFILLRIYQTIAQLPEQHFL
SLSSKMIFMGKVLIESQGKIFIALSPLTLLFFQQISWVAPLTNIIAVPIVGGVIVPLNIMAACAWFIVKPFGNMLFHFND
MLLSILLSCLGLLEKLSLPLQGISLTPLSLLAISCAIIILFLPKGILPKTWGILCCLPLVIMNKTSQQIQLNILDVGQGQ
AIFLQHPQQNWLIDTGGSYDEKIFSIGQNVVVPFLRQQGVRRLDHVVLSHLDQDHSGAFPIIQQEIPVKQLISNEQLPND
LKQPFQYCHQGQQWHYPELDIQILWPKEKDLAFVTSNQNQYSCVVYLQFKKVGGYQNFLIMGDAGWEAEYELLKDYPNLK
IDVLVLGHHGSKHSSAYDFLATLKPKLAIASAGFDNRYGHPSQQVIARLKALHIPLKSTLEQGTLSFVLENHKLVLHDRR
LDRLWLSRGF
Nucleotide
Download Length: 2433 bp
>NTDB_id=980040 AAFA12_RS13540 WP_000472707.1 2776375..2778807(-) (comA/comEC) [Acinetobacter baumannii strain F19-10-MH12]
ATGTTTAAGATTATTCTATTGGGGTGGATTGGCGGTATTGCATTGATGGGAATAGATTTCCCTTTAATCATGCAATATGA
AAAAGTGGGCGAGGCTCTACTGTTACTTGCCTTTATTTTTTATCTTTATAAACGACCAATGTTCGTTGATCGACCATTTT
TAAAGGCAGTGTTTTGCTTATTATGTACAACAAGTCTTTTTATGGTTGGTTACCACTATGCTGAAAAAGCACTGATTGAA
CGATTAGAACAAAGAGAAACGGATACCCGAAATCTCGACATTATTGTCTATATAAACCGTTTAAGTGAAGAAAAAGATAA
TAAGGTTCAACAAACTGCACAAGTTCTAAATTTTTCTAAAGAACCGGTGAATTGGTTGCTATATTTAAAAAGTAATAATC
AAAATTTATTAAAGAATAATCAGAATCTTGAATTAGGTCACTATTATCGAATATCTGGAAAAACAAGACCTGCGCATAGT
TATGCCACCCCAGGAGCTTTTGATCAGGAAAAATGGTTTATTCAGCGAAATATTATGTCTGGTTTTAATGTGAGATATAT
TGAGCCTTTAAGTCTCGATGAAATCTATCGATTGGGCTATCAGCAACATTTAAAAGAACAACAGTCTTTTTCCAATAGTT
TTCGTTTAAATATAGAAAAACTTCGCTTAACTTTTAGGCAAATATTAAACAGCTCATCTCTACAGCAAAAGGGTTTAATT
TTAGCTTTGCTGACAGGTGATGAAAGCCTTTTATCAGATGAAACTCAACTACAGTTCAAACAATTAGGAATTAGTCATTT
ATTGGCGATCTCAGGCCCACATGTGCTCATTTTTGCCATTATGTTATCTTGGGCATGTCATCAATTTATCAGTCGTTATT
ATCCTCAAATTTACTTATGGAAACCGAAACAGGTTTTGATGACTGTACCATGCTGCCTTGGTGTTTTAATTTATACTGCA
TTTGTAGGTTTCGAAATTCCTGCACTACGAACATTATTATCAGCCCTTATATTTATTGGATTTCTATTATTAAAACAACC
TATTAAACCTTTTACATTACTCGTATATAGCGCAAGTCTACTGTTGCTAATTGACCCGTTTAGTGTGCTTTCTGCAGGTT
TTTGGCTGTCTTATGGGGCATGCTTTATTTTATTAAGAATTTACCAAACTATAGCGCAGCTACCTGAGCAACATTTTTTA
AGTCTGAGCTCAAAAATGATTTTTATGGGTAAGGTGTTAATTGAGTCTCAAGGCAAAATATTTATTGCATTGAGTCCCTT
AACCTTACTTTTCTTTCAACAAATTTCTTGGGTTGCTCCATTAACCAATATTATTGCCGTGCCTATTGTTGGTGGTGTTA
TTGTCCCTTTAAACATTATGGCTGCTTGCGCATGGTTTATAGTAAAACCGTTTGGAAATATGCTTTTTCATTTCAATGAT
ATGTTGCTCAGCATATTGCTGAGTTGTTTGGGCTTATTAGAAAAACTCTCTTTACCATTACAAGGTATAAGCTTGACGCC
ACTGTCTTTATTAGCGATTAGCTGTGCCATTATTATTTTATTTTTACCTAAAGGAATTCTGCCTAAAACTTGGGGAATAT
TATGCTGTTTACCCTTAGTTATTATGAACAAAACGAGTCAGCAAATTCAGCTTAATATTTTAGATGTTGGACAGGGGCAG
GCCATTTTTTTACAACATCCCCAACAAAACTGGTTAATTGACACAGGCGGTTCTTACGATGAAAAAATATTTAGTATTGG
ACAAAATGTTGTAGTGCCTTTTCTACGTCAGCAAGGCGTAAGACGATTAGATCATGTTGTGCTATCTCATCTTGATCAAG
ACCATAGTGGCGCGTTTCCTATTATTCAACAAGAGATTCCTGTAAAGCAGCTTATTTCGAATGAACAATTGCCAAATGAT
TTAAAGCAACCATTCCAATATTGCCATCAAGGGCAACAATGGCATTATCCTGAGTTAGATATTCAAATTTTATGGCCTAA
AGAAAAAGATCTGGCTTTTGTTACTTCTAACCAGAATCAATATTCTTGTGTTGTATATCTTCAATTTAAAAAAGTTGGTG
GTTACCAAAATTTTCTTATTATGGGCGATGCAGGATGGGAAGCTGAATACGAGTTATTAAAAGATTATCCTAACTTGAAG
ATAGATGTGTTGGTGCTAGGACATCATGGAAGTAAGCACAGTTCGGCTTATGATTTCTTGGCGACCTTAAAACCTAAACT
GGCCATTGCATCGGCAGGGTTTGATAACCGTTATGGCCATCCTAGCCAACAAGTTATAGCACGTTTAAAAGCTCTGCATA
TTCCGCTAAAAAGTACTTTGGAACAAGGGACCTTAAGTTTTGTGCTGGAAAACCACAAATTAGTTTTACATGACCGACGT
TTGGATAGGCTCTGGTTGAGTAGAGGTTTTTAA
ATGTTTAAGATTATTCTATTGGGGTGGATTGGCGGTATTGCATTGATGGGAATAGATTTCCCTTTAATCATGCAATATGA
AAAAGTGGGCGAGGCTCTACTGTTACTTGCCTTTATTTTTTATCTTTATAAACGACCAATGTTCGTTGATCGACCATTTT
TAAAGGCAGTGTTTTGCTTATTATGTACAACAAGTCTTTTTATGGTTGGTTACCACTATGCTGAAAAAGCACTGATTGAA
CGATTAGAACAAAGAGAAACGGATACCCGAAATCTCGACATTATTGTCTATATAAACCGTTTAAGTGAAGAAAAAGATAA
TAAGGTTCAACAAACTGCACAAGTTCTAAATTTTTCTAAAGAACCGGTGAATTGGTTGCTATATTTAAAAAGTAATAATC
AAAATTTATTAAAGAATAATCAGAATCTTGAATTAGGTCACTATTATCGAATATCTGGAAAAACAAGACCTGCGCATAGT
TATGCCACCCCAGGAGCTTTTGATCAGGAAAAATGGTTTATTCAGCGAAATATTATGTCTGGTTTTAATGTGAGATATAT
TGAGCCTTTAAGTCTCGATGAAATCTATCGATTGGGCTATCAGCAACATTTAAAAGAACAACAGTCTTTTTCCAATAGTT
TTCGTTTAAATATAGAAAAACTTCGCTTAACTTTTAGGCAAATATTAAACAGCTCATCTCTACAGCAAAAGGGTTTAATT
TTAGCTTTGCTGACAGGTGATGAAAGCCTTTTATCAGATGAAACTCAACTACAGTTCAAACAATTAGGAATTAGTCATTT
ATTGGCGATCTCAGGCCCACATGTGCTCATTTTTGCCATTATGTTATCTTGGGCATGTCATCAATTTATCAGTCGTTATT
ATCCTCAAATTTACTTATGGAAACCGAAACAGGTTTTGATGACTGTACCATGCTGCCTTGGTGTTTTAATTTATACTGCA
TTTGTAGGTTTCGAAATTCCTGCACTACGAACATTATTATCAGCCCTTATATTTATTGGATTTCTATTATTAAAACAACC
TATTAAACCTTTTACATTACTCGTATATAGCGCAAGTCTACTGTTGCTAATTGACCCGTTTAGTGTGCTTTCTGCAGGTT
TTTGGCTGTCTTATGGGGCATGCTTTATTTTATTAAGAATTTACCAAACTATAGCGCAGCTACCTGAGCAACATTTTTTA
AGTCTGAGCTCAAAAATGATTTTTATGGGTAAGGTGTTAATTGAGTCTCAAGGCAAAATATTTATTGCATTGAGTCCCTT
AACCTTACTTTTCTTTCAACAAATTTCTTGGGTTGCTCCATTAACCAATATTATTGCCGTGCCTATTGTTGGTGGTGTTA
TTGTCCCTTTAAACATTATGGCTGCTTGCGCATGGTTTATAGTAAAACCGTTTGGAAATATGCTTTTTCATTTCAATGAT
ATGTTGCTCAGCATATTGCTGAGTTGTTTGGGCTTATTAGAAAAACTCTCTTTACCATTACAAGGTATAAGCTTGACGCC
ACTGTCTTTATTAGCGATTAGCTGTGCCATTATTATTTTATTTTTACCTAAAGGAATTCTGCCTAAAACTTGGGGAATAT
TATGCTGTTTACCCTTAGTTATTATGAACAAAACGAGTCAGCAAATTCAGCTTAATATTTTAGATGTTGGACAGGGGCAG
GCCATTTTTTTACAACATCCCCAACAAAACTGGTTAATTGACACAGGCGGTTCTTACGATGAAAAAATATTTAGTATTGG
ACAAAATGTTGTAGTGCCTTTTCTACGTCAGCAAGGCGTAAGACGATTAGATCATGTTGTGCTATCTCATCTTGATCAAG
ACCATAGTGGCGCGTTTCCTATTATTCAACAAGAGATTCCTGTAAAGCAGCTTATTTCGAATGAACAATTGCCAAATGAT
TTAAAGCAACCATTCCAATATTGCCATCAAGGGCAACAATGGCATTATCCTGAGTTAGATATTCAAATTTTATGGCCTAA
AGAAAAAGATCTGGCTTTTGTTACTTCTAACCAGAATCAATATTCTTGTGTTGTATATCTTCAATTTAAAAAAGTTGGTG
GTTACCAAAATTTTCTTATTATGGGCGATGCAGGATGGGAAGCTGAATACGAGTTATTAAAAGATTATCCTAACTTGAAG
ATAGATGTGTTGGTGCTAGGACATCATGGAAGTAAGCACAGTTCGGCTTATGATTTCTTGGCGACCTTAAAACCTAAACT
GGCCATTGCATCGGCAGGGTTTGATAACCGTTATGGCCATCCTAGCCAACAAGTTATAGCACGTTTAAAAGCTCTGCATA
TTCCGCTAAAAAGTACTTTGGAACAAGGGACCTTAAGTTTTGTGCTGGAAAACCACAAATTAGTTTTACATGACCGACGT
TTGGATAGGCTCTGGTTGAGTAGAGGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comA/comEC | Acinetobacter baumannii D1279779 |
97.901 |
100 |
0.979 |
| comA/comEC | Acinetobacter baumannii strain A118 |
97.654 |
100 |
0.977 |
| comA/comEC | Acinetobacter baylyi ADP1 |
50.062 |
100 |
0.501 |