Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   AAFA25_RS02370 Genome accession   NZ_CP151694
Coordinates   496600..497340 (+) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain F19-10-CH3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 491600..502340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFA25_RS02355 (AAFA25_02355) ponA 492187..494742 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  AAFA25_RS02360 (AAFA25_02360) pilM 494904..495962 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  AAFA25_RS02365 (AAFA25_02365) pilN 495962..496603 (+) 642 WP_000201221.1 PilN domain-containing protein Machinery gene
  AAFA25_RS02370 (AAFA25_02370) pilO 496600..497340 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  AAFA25_RS02375 (AAFA25_02375) pilP 497351..497878 (+) 528 WP_000695061.1 pilus assembly protein PilP Machinery gene
  AAFA25_RS02380 (AAFA25_02380) pilQ 497941..500106 (+) 2166 WP_001017029.1 type IV pilus secretin PilQ family protein Machinery gene
  AAFA25_RS02385 (AAFA25_02385) aroK 500118..500687 (+) 570 WP_000643712.1 shikimate kinase AroK -
  AAFA25_RS02390 (AAFA25_02390) aroB 500716..501798 (+) 1083 WP_001194249.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=979976 AAFA25_RS02370 WP_000076101.1 496600..497340(+) (pilO) [Acinetobacter baumannii strain F19-10-CH3]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=979976 AAFA25_RS02370 WP_000076101.1 496600..497340(+) (pilO) [Acinetobacter baumannii strain F19-10-CH3]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTGCCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTAGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACTGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment