Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AAE485_RS05190 Genome accession   NZ_CP151686
Coordinates   1018379..1019737 (+) Length   452 a.a.
NCBI ID   WP_215861728.1    Uniprot ID   -
Organism   Acidithiobacillus ferriphilus strain QBS3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1013379..1024737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAE485_RS05175 (AAE485_05090) aroE 1014081..1014980 (+) 900 WP_409409675.1 shikimate dehydrogenase -
  AAE485_RS05180 (AAE485_05095) pilB 1014950..1016659 (+) 1710 WP_215861867.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AAE485_RS05185 (AAE485_05100) - 1017114..1018382 (+) 1269 WP_409409676.1 two-component system sensor histidine kinase NtrB -
  AAE485_RS05190 (AAE485_05105) pilR 1018379..1019737 (+) 1359 WP_215861728.1 sigma-54 dependent transcriptional regulator Regulator
  AAE485_RS05195 (AAE485_05110) - 1019734..1020534 (+) 801 WP_064220377.1 prepilin peptidase -
  AAE485_RS05200 (AAE485_05115) coaE 1020535..1021137 (+) 603 WP_215861727.1 dephospho-CoA kinase -
  AAE485_RS05205 (AAE485_05120) - 1021254..1022006 (+) 753 WP_409409677.1 cell division protein ZapD -
  AAE485_RS05210 (AAE485_05125) - 1022040..1023050 (+) 1011 WP_064220380.1 class 1 fructose-bisphosphatase -
  AAE485_RS05215 (AAE485_05130) - 1023141..1023461 (+) 321 WP_215861725.1 hypothetical protein -
  AAE485_RS05220 (AAE485_05135) - 1023521..1024291 (+) 771 WP_409409678.1 hypothetical protein -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48426.66 Da        Isoelectric Point: 6.0259

>NTDB_id=979819 AAE485_RS05190 WP_215861728.1 1018379..1019737(+) (pilR) [Acidithiobacillus ferriphilus strain QBS3]
MMADFSVLPPALIVDDEPNIVELLGITLQGMGIAVTGAYSLAEAFARLAEGAPSLCLSDLRLPDGSGIDLVRRLHALHPR
VPVAVITAYSSADGAVEAMQAGAFDYMAKPIELTRLRRLISQAVDLARLSPMGSDGTQRLVGDSPVMRRLRDDIRRVARS
NAPVHITGESGTGKELAARAIHASGVRHDKPFVAVNCGAIPDGLVESELFGAEKGAYSGAVQRREGLFVAANGGTIFLDE
VGELPMMVQVKLLRAIQERSIRPLGASREIPLDLRFISATHRNLQEMVVAGSFRRDLLYRLDVVRLHMPPLREHPEDIPQ
LAEVILQRIGGAQPGVPTRLSAGTLARLGGYAFPGNVRELENLLERRIALQRDDILPEEELTSSGRVAPENSVLAAVSAS
AAAAGLDTAEAALLRQMLGQAGGDRHHAADLLGVSVQSLELRLSRLSLEEIA

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=979819 AAE485_RS05190 WP_215861728.1 1018379..1019737(+) (pilR) [Acidithiobacillus ferriphilus strain QBS3]
ATGATGGCCGATTTTTCCGTATTGCCACCTGCCCTGATCGTGGATGATGAGCCGAATATCGTTGAATTGCTGGGCATTAC
GTTGCAAGGTATGGGAATCGCTGTCACCGGTGCCTATTCCCTCGCAGAGGCCTTCGCCCGCCTCGCCGAAGGTGCCCCCT
CTTTATGCTTGAGCGATCTGCGTTTGCCGGATGGTTCGGGTATCGATCTGGTACGTCGTCTACACGCGTTGCATCCGCGA
GTACCGGTCGCCGTGATTACGGCCTACTCTTCCGCCGATGGAGCCGTCGAGGCGATGCAGGCAGGGGCCTTTGATTACAT
GGCTAAGCCCATCGAACTTACGCGTCTGCGGCGACTGATATCGCAAGCCGTTGATCTCGCTCGCCTGTCACCGATGGGTT
CGGACGGTACGCAAAGGTTGGTGGGCGATTCCCCGGTCATGCGGCGCTTGCGCGACGATATCCGCCGTGTCGCGCGAAGT
AACGCGCCGGTACATATTACCGGTGAGTCTGGTACGGGTAAGGAGTTGGCAGCGCGTGCGATACACGCCTCGGGGGTCCG
TCACGACAAGCCTTTCGTGGCCGTCAACTGCGGCGCCATTCCCGATGGACTGGTAGAAAGCGAGCTCTTTGGTGCCGAAA
AGGGGGCTTACTCCGGTGCTGTACAGCGCCGCGAGGGGCTCTTTGTGGCGGCCAATGGCGGTACCATTTTCCTGGATGAG
GTCGGTGAGCTACCGATGATGGTGCAGGTTAAGCTCCTGCGCGCCATTCAGGAGCGCAGCATTCGTCCATTGGGCGCATC
GCGGGAAATTCCCCTGGACCTGCGTTTCATCTCCGCAACCCACCGTAATTTGCAAGAGATGGTTGTTGCCGGTAGCTTTC
GTCGGGATCTCCTGTATCGATTGGATGTCGTGCGACTTCATATGCCTCCCTTGCGTGAGCATCCGGAGGATATTCCTCAG
TTGGCAGAGGTGATTCTGCAGCGTATCGGGGGCGCGCAGCCTGGTGTGCCGACGCGGCTGTCTGCGGGGACTCTTGCGCG
ACTGGGTGGTTACGCCTTCCCCGGCAATGTCCGCGAACTGGAAAATTTGCTGGAGCGTCGTATCGCTTTACAGCGGGACG
ATATTCTACCTGAAGAAGAACTTACGTCCTCTGGCCGCGTGGCGCCAGAAAACAGCGTACTTGCCGCTGTATCGGCAAGC
GCTGCCGCGGCTGGTTTAGACACGGCCGAGGCAGCATTACTGCGCCAGATGCTGGGGCAGGCCGGGGGAGACCGGCATCA
TGCCGCAGATCTGCTGGGTGTCAGTGTGCAGTCTCTGGAACTGAGACTCAGCAGATTGTCTCTGGAAGAAATCGCATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(12-120)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

49.436

98.009

0.485
  pilR Acinetobacter baumannii strain A118

39.913

100

0.407

Multiple sequence alignment