Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Regulator
Locus tag   ACGHT2_RS10070 Genome accession   NZ_AP031455
Coordinates   1921180..1921698 (+) Length   172 a.a.
NCBI ID   WP_390578374.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain k46-0107-A9     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1916180..1926698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHT2_RS10030 (K460107A9_18860) - 1916466..1916684 (-) 219 WP_003066580.1 Blp family class II bacteriocin -
  ACGHT2_RS10035 (K460107A9_18880) - 1917260..1917490 (-) 231 WP_058692512.1 bacteriocin class II family protein -
  ACGHT2_RS10040 - 1917683..1917802 (-) 120 WP_253066439.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  ACGHT2_RS10045 - 1917799..1918146 (-) 348 WP_231729919.1 CPBP family intramembrane glutamic endopeptidase -
  ACGHT2_RS10050 (K460107A9_18900) - 1918176..1918355 (-) 180 WP_003066584.1 hypothetical protein -
  ACGHT2_RS10055 (K460107A9_18910) - 1918525..1918836 (-) 312 WP_003066586.1 hypothetical protein -
  ACGHT2_RS10060 (K460107A9_18920) - 1918924..1919145 (-) 222 WP_048791095.1 bacteriocin -
  ACGHT2_RS10065 (K460107A9_18930) - 1919390..1921168 (+) 1779 Protein_1925 peptide cleavage/export ABC transporter -
  ACGHT2_RS10070 (K460107A9_18940) comB 1921180..1921698 (+) 519 WP_390578374.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator
  ACGHT2_RS10075 (K460107A9_18950) rsmA 1921832..1922704 (-) 873 WP_058692540.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  ACGHT2_RS10080 (K460107A9_18960) - 1922785..1923309 (-) 525 WP_048791092.1 DUF1697 domain-containing protein -
  ACGHT2_RS10085 (K460107A9_18970) rnmV 1923306..1923875 (-) 570 WP_058692541.1 ribonuclease M5 -
  ACGHT2_RS10090 (K460107A9_18980) - 1923868..1924638 (-) 771 WP_270620136.1 TatD family hydrolase -
  ACGHT2_RS10095 (K460107A9_18990) - 1924821..1926437 (+) 1617 WP_390578375.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19057.62 Da        Isoelectric Point: 9.4758

>NTDB_id=97974 ACGHT2_RS10070 WP_390578374.1 1921180..1921698(+) (comB) [Streptococcus pasteurianus strain k46-0107-A9]
MTQAETQLTQITQEKENLQAQLDQTNLSKADTVLKASQSGILHVSDEFEGQTLLPQGSQIAEIYPDIAKTQQVAIRYYVD
STHVSQLKKGQTVRLTLEKISNHAIVITGKISKIASSATQTKEGNIFEVTALATADKQDSSKLKYGLQGKTISTIGKKTF
FNYYKDKLLKDF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=97974 ACGHT2_RS10070 WP_390578374.1 1921180..1921698(+) (comB) [Streptococcus pasteurianus strain k46-0107-A9]
TTGACACAAGCTGAAACACAACTTACGCAAATTACTCAAGAAAAAGAAAATTTGCAAGCGCAGCTTGACCAGACAAATCT
CTCCAAAGCTGACACCGTTTTAAAAGCTAGTCAAAGTGGCATTTTACATGTTTCTGATGAATTTGAAGGGCAAACGCTCT
TGCCGCAAGGCAGTCAGATTGCAGAGATTTACCCAGATATTGCCAAAACACAGCAAGTCGCTATCCGCTATTACGTTGAC
TCCACTCATGTTAGTCAATTGAAAAAAGGACAGACTGTTCGCCTAACCCTTGAAAAAATTAGCAATCACGCTATTGTTAT
CACTGGCAAAATCAGTAAAATTGCAAGTTCTGCCACACAAACCAAAGAAGGAAATATCTTTGAGGTGACAGCACTAGCCA
CCGCTGATAAACAAGATAGCTCCAAATTAAAATATGGTTTACAAGGCAAAACAATCAGCACTATCGGCAAAAAAACTTTC
TTTAATTATTACAAAGACAAGCTATTAAAAGATTTTTGA

Domains

Predicted by InterProScan.

HlyD family secretion protein ()

(33-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Streptococcus mutans UA159

57.463

77.907

0.448
  comB/nlmE Streptococcus mutans UA159

52.239

77.907

0.407
  comB Streptococcus gordonii str. Challis substr. CH1

37.805

95.349

0.36

Multiple sequence alignment