Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   AADZ70_RS16880 Genome accession   NZ_CP151679
Coordinates   3356334..3356453 (+) Length   39 a.a.
NCBI ID   WP_016937261.1    Uniprot ID   -
Organism   Bacillus sp. YBsi01     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 3351334..3361453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADZ70_RS16865 (AADZ70_16865) - 3352945..3353628 (+) 684 WP_016937264.1 response regulator transcription factor -
  AADZ70_RS16870 (AADZ70_16870) - 3353615..3355048 (+) 1434 WP_197083934.1 HAMP domain-containing sensor histidine kinase -
  AADZ70_RS16875 (AADZ70_16875) rapC 3355202..3356350 (+) 1149 WP_045926250.1 tetratricopeptide repeat protein Regulator
  AADZ70_RS16880 (AADZ70_16880) phrC 3356334..3356453 (+) 120 WP_016937261.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  AADZ70_RS16885 (AADZ70_16885) - 3356597..3356695 (-) 99 WP_016937260.1 YjcZ family sporulation protein -
  AADZ70_RS16890 (AADZ70_16890) - 3356791..3358155 (-) 1365 WP_064778211.1 aspartate kinase -
  AADZ70_RS16895 (AADZ70_16895) ceuB 3358570..3359523 (+) 954 WP_016937258.1 ABC transporter permease Machinery gene
  AADZ70_RS16900 (AADZ70_16900) - 3359513..3360460 (+) 948 WP_016937257.1 iron chelate uptake ABC transporter family permease subunit -
  AADZ70_RS16905 (AADZ70_16905) - 3360454..3361212 (+) 759 WP_016937256.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4214.93 Da        Isoelectric Point: 8.0284

>NTDB_id=979724 AADZ70_RS16880 WP_016937261.1 3356334..3356453(+) (phrC) [Bacillus sp. YBsi01]
MKLKSKWFVICLAAAAIFTVAGAGQTDQADFHVTERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=979724 AADZ70_RS16880 WP_016937261.1 3356334..3356453(+) (phrC) [Bacillus sp. YBsi01]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTTGCAGGTGCAGGCCAGACAGA
TCAGGCTGACTTCCATGTAACTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

77.5

100

0.795

Multiple sequence alignment