Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AADZ70_RS12435 Genome accession   NZ_CP151679
Coordinates   2481612..2482301 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. YBsi01     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2476612..2487301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADZ70_RS12400 (AADZ70_12400) - 2476810..2477292 (-) 483 WP_045926612.1 flagellar protein FlgN -
  AADZ70_RS12405 (AADZ70_12405) flgM 2477307..2477573 (-) 267 WP_016937773.1 flagellar biosynthesis anti-sigma factor FlgM -
  AADZ70_RS12410 (AADZ70_12410) - 2477643..2478062 (-) 420 WP_016937772.1 TIGR03826 family flagellar region protein -
  AADZ70_RS12415 (AADZ70_12415) comFC 2478136..2478645 (-) 510 WP_342007114.1 phosphoribosyltransferase family protein Machinery gene
  AADZ70_RS12420 (AADZ70_12420) - 2478831..2479115 (-) 285 WP_016937770.1 competence protein ComFB -
  AADZ70_RS12425 (AADZ70_12425) comFA 2479173..2480558 (-) 1386 WP_342007115.1 DEAD/DEAH box helicase Machinery gene
  AADZ70_RS12430 (AADZ70_12430) - 2480666..2481514 (-) 849 WP_342007116.1 DegV family protein -
  AADZ70_RS12435 (AADZ70_12435) degU 2481612..2482301 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AADZ70_RS12440 (AADZ70_12440) degS 2482378..2483541 (-) 1164 WP_016937767.1 two-component sensor histidine kinase DegS Regulator
  AADZ70_RS12445 (AADZ70_12445) - 2483764..2484411 (+) 648 WP_045927194.1 YigZ family protein -
  AADZ70_RS12450 (AADZ70_12450) - 2484416..2485642 (+) 1227 WP_342007117.1 LCP family protein -
  AADZ70_RS12455 (AADZ70_12455) - 2485741..2486817 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=979705 AADZ70_RS12435 WP_003219701.1 2481612..2482301(-) (degU) [Bacillus sp. YBsi01]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=979705 AADZ70_RS12435 WP_003219701.1 2481612..2482301(-) (degU) [Bacillus sp. YBsi01]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAAGCGGCTCGTATCGTCGAGCATTATCATCCCGATGTCGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACCCATGCTTTAAAAACAGGCGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCGGATACTTTAATTGAGGCAGTGAAAGTGGTAGCCGAAGGCGGTTCGTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGACGTCTTGCGACAAGCGGAGTTTCCGCTCATCCTCAGCATGAGGTTTATCCGGAAATTCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAACGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment