Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACNHKS_RS21940 Genome accession   NZ_CP182145
Coordinates   4492135..4493127 (+) Length   330 a.a.
NCBI ID   WP_248872609.1    Uniprot ID   -
Organism   Escherichia coli strain CUWW10     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4487135..4498127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNHKS_RS21915 (ACNHKS_21915) rbsD 4487259..4487678 (+) 420 WP_001301979.1 D-ribose pyranase -
  ACNHKS_RS21920 (ACNHKS_21920) rbsA 4487686..4489191 (+) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  ACNHKS_RS21925 (ACNHKS_21925) rbsC 4489196..4490161 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  ACNHKS_RS21930 (ACNHKS_21930) rbsB 4490186..4491076 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  ACNHKS_RS21935 (ACNHKS_21935) rbsK 4491202..4492131 (+) 930 WP_001300603.1 ribokinase -
  ACNHKS_RS21940 (ACNHKS_21940) cytR 4492135..4493127 (+) 993 WP_248872609.1 ribose operon transcriptional repressor RbsR Regulator
  ACNHKS_RS21945 (ACNHKS_21945) mdtD 4493093..4494520 (-) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  ACNHKS_RS21950 (ACNHKS_21950) yieP 4494543..4495235 (-) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36655.91 Da        Isoelectric Point: 5.0756

>NTDB_id=979703 ACNHKS_RS21940 WP_248872609.1 4492135..4493127(+) (cytR) [Escherichia coli strain CUWW10]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEEAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAVDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=979703 ACNHKS_RS21940 WP_248872609.1 4492135..4493127(+) (cytR) [Escherichia coli strain CUWW10]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGAGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCAGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGGTTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.414

93.03

0.367

Multiple sequence alignment