Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   AAEO81_RS09845 Genome accession   NZ_CP151650
Coordinates   2113855..2116071 (+) Length   738 a.a.
NCBI ID   WP_341963169.1    Uniprot ID   -
Organism   Pseudomonas sp. RC10     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2108855..2121071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEO81_RS09825 (AAEO81_09825) - 2110576..2111199 (+) 624 WP_341963163.1 glutathione S-transferase -
  AAEO81_RS09830 (AAEO81_09830) - 2111398..2112330 (+) 933 WP_166596748.1 ABC transporter ATP-binding protein -
  AAEO81_RS09835 (AAEO81_09835) - 2112327..2113106 (+) 780 WP_341963166.1 ABC transporter permease -
  AAEO81_RS09840 (AAEO81_09840) - 2113184..2113699 (-) 516 WP_341963168.1 DUF2062 domain-containing protein -
  AAEO81_RS09845 (AAEO81_09845) comA 2113855..2116071 (+) 2217 WP_341963169.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AAEO81_RS09850 (AAEO81_09850) exbB 2116165..2116839 (+) 675 WP_341963171.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AAEO81_RS09855 (AAEO81_09855) - 2116836..2117267 (+) 432 WP_166596753.1 biopolymer transporter ExbD -
  AAEO81_RS09860 (AAEO81_09860) lpxK 2117267..2118262 (+) 996 WP_341963173.1 tetraacyldisaccharide 4'-kinase -
  AAEO81_RS09865 (AAEO81_09865) - 2118280..2118465 (+) 186 WP_003174668.1 Trm112 family protein -
  AAEO81_RS09870 (AAEO81_09870) kdsB 2118462..2119226 (+) 765 WP_341963198.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AAEO81_RS09875 (AAEO81_09875) murB 2119264..2120283 (+) 1020 WP_341963199.1 UDP-N-acetylmuramate dehydrogenase -
  AAEO81_RS09880 (AAEO81_09880) - 2120368..2120958 (+) 591 WP_341963201.1 nucleotidyltransferase family protein -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80757.59 Da        Isoelectric Point: 7.3973

>NTDB_id=979512 AAEO81_RS09845 WP_341963169.1 2113855..2116071(+) (comA) [Pseudomonas sp. RC10]
MRTGMVALALGLLVLRFLPALPPVWLMLAMPVVALMLLPFRSYPLAFFLFGLTWASVSAQSALDDRLPERLDGQTLWLEG
TVVGLPQSADGVVRFQLEDPVSRRTRLPDRMRVAWYGGADVRSGERWRLAVKLKRPGGLANPGAFDYEAWLLAQRIGATG
TVVDGELIAATAEPWRDRIRQRLMAVDAQGHEGGLAALVLGDDSGLSTAQWQVLQDTGTVHLLVISGTHIGLLAGLLYGL
VAGLARWGLWPRFIPWLPSACALALGGALIYGFLAGFDVPVQRACIMLGLVLLWRLRFRHLGVAWPILIALNGVLLAEPL
ISLRPGFWLSFAAVGILLLIFGGRLGAWHWLHSWSRAQWLIALGLLPVLLALNLPVSLSGPLVNLVAVPWVSVLILPLAL
FGTFLLSIPPIGESLLWLAGGAMEGLFRVLSPMADLIPAWTGPAVPFWVWPFSLLGALLLLLPNGVPLRPLGWPMLLLCV
FAPQKSVPLGEVEVTQLDVGQGLAILLRTQNHALLYDAGPRFGEFDIGQRVVLPAIRRAGITELDLMLLSHADADHAGGA
PAIHQAMPVSRVLGGDIERMPPELSVERCQNGERWTWDNVTFATWIWEQAGEGNQGSCVLSIEANGERLLLTGDIDVPAE
RAMLEQGFDVRADWLQAPHHGSRTSSSKRFLQAVSPRGVLISRGRNNAFGHPHPLVMSRYRWLKIDTHDSAEHGALTLQL
GTFGEVDFERAVRRFWRE

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=979512 AAEO81_RS09845 WP_341963169.1 2113855..2116071(+) (comA) [Pseudomonas sp. RC10]
ATGCGCACAGGGATGGTGGCGCTAGCACTGGGATTGTTGGTCCTGCGTTTTTTACCGGCATTACCGCCGGTCTGGTTGAT
GCTGGCGATGCCGGTGGTGGCGCTGATGCTGTTGCCATTTCGCAGTTATCCGCTGGCTTTTTTTCTGTTTGGACTGACGT
GGGCCAGCGTTTCCGCGCAATCCGCCTTGGACGATCGATTGCCCGAGCGGCTCGACGGCCAGACGTTGTGGCTCGAAGGC
ACTGTCGTCGGTTTGCCTCAGAGCGCTGACGGCGTGGTGCGTTTTCAGCTCGAAGACCCTGTTTCGCGGCGCACTCGATT
GCCGGATCGCATGCGCGTCGCCTGGTACGGCGGTGCCGACGTGCGCAGCGGCGAGCGCTGGCGGTTGGCGGTCAAACTCA
AACGCCCCGGCGGTCTGGCCAACCCCGGCGCGTTCGACTACGAGGCCTGGCTGTTGGCCCAGCGTATCGGGGCGACGGGC
ACGGTGGTTGACGGCGAGTTGATCGCGGCCACGGCAGAACCCTGGCGGGATCGCATTCGTCAGCGGCTGATGGCAGTCGA
TGCCCAAGGGCATGAGGGCGGTCTCGCGGCGCTGGTGTTGGGGGACGATTCGGGCCTCAGCACGGCACAGTGGCAGGTGC
TGCAAGACACCGGCACCGTGCACCTGCTGGTGATCTCGGGTACTCACATCGGGCTTCTGGCAGGATTGCTTTACGGTCTG
GTGGCGGGCCTTGCACGCTGGGGGCTGTGGCCACGGTTCATCCCCTGGTTGCCCTCAGCCTGCGCGCTCGCTTTGGGTGG
TGCGTTGATTTACGGCTTTCTCGCCGGGTTCGACGTGCCGGTGCAGCGGGCCTGCATCATGCTCGGACTCGTCCTGCTGT
GGCGCCTGCGGTTTCGGCATCTGGGCGTGGCCTGGCCAATACTGATCGCGCTCAACGGCGTATTGCTCGCCGAGCCGCTG
ATCAGTCTGCGCCCCGGTTTCTGGCTGTCGTTCGCGGCGGTCGGAATTCTCCTCCTGATCTTCGGTGGACGCCTCGGCGC
CTGGCACTGGCTGCACAGTTGGTCTCGCGCCCAGTGGCTGATCGCGCTCGGTCTGCTGCCGGTGCTGCTGGCGCTGAACC
TGCCGGTCAGCCTGAGCGGGCCGCTGGTCAATCTGGTCGCGGTGCCGTGGGTCAGTGTTTTGATCCTGCCCTTGGCACTG
TTCGGCACGTTTTTGCTCTCGATTCCGCCGATTGGTGAGAGCTTGCTCTGGCTGGCGGGCGGCGCGATGGAGGGGCTCTT
CCGGGTGCTCAGCCCGATGGCCGACCTCATACCCGCGTGGACGGGTCCTGCCGTGCCGTTCTGGGTCTGGCCCTTCAGTC
TGTTGGGTGCGTTGCTGCTGTTGCTGCCCAATGGCGTGCCGTTGCGCCCGCTGGGCTGGCCGATGTTGCTGCTGTGCGTG
TTCGCGCCGCAGAAAAGCGTCCCGTTGGGCGAAGTCGAAGTGACGCAACTGGACGTCGGCCAAGGCCTGGCGATCCTGCT
GCGCACGCAAAACCATGCGCTGCTGTATGACGCCGGGCCGCGGTTTGGCGAGTTCGACATCGGACAGCGTGTGGTCCTTC
CGGCCATTCGCCGTGCCGGGATCACCGAGTTGGACCTGATGCTGCTCAGCCACGCCGACGCTGATCACGCGGGAGGGGCG
CCTGCCATCCATCAAGCCATGCCAGTGTCGAGAGTGCTTGGCGGCGACATCGAACGCATGCCCCCCGAATTGTCTGTCGA
GCGCTGTCAGAACGGTGAGCGCTGGACGTGGGACAACGTGACGTTTGCCACCTGGATCTGGGAGCAGGCCGGGGAGGGCA
ATCAGGGTTCCTGCGTCCTGAGCATCGAGGCGAACGGCGAGCGGCTGTTATTGACCGGTGACATCGACGTCCCTGCCGAG
CGCGCCATGCTGGAGCAAGGTTTCGACGTTCGTGCCGACTGGCTGCAAGCGCCTCATCACGGCAGCCGCACGTCTTCGTC
GAAACGCTTTCTGCAGGCGGTTTCGCCTCGCGGTGTGCTGATTTCCCGAGGTCGCAATAATGCGTTTGGCCATCCCCATC
CGTTGGTGATGTCGCGCTACCGCTGGCTGAAGATCGACACCCATGACAGTGCGGAGCATGGGGCTCTCACGCTGCAATTG
GGGACCTTCGGCGAGGTGGACTTCGAGCGGGCTGTCCGACGTTTCTGGCGAGAGTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)

Domain of unknown function (DUF4131) (DUF4131)

(22-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.185

96.748

0.602
  comA Ralstonia pseudosolanacearum GMI1000

32.254

100

0.364

Multiple sequence alignment