Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AAEO81_RS09850 Genome accession   NZ_CP151650
Coordinates   2116165..2116839 (+) Length   224 a.a.
NCBI ID   WP_341963171.1    Uniprot ID   -
Organism   Pseudomonas sp. RC10     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2111165..2121839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEO81_RS09830 (AAEO81_09830) - 2111398..2112330 (+) 933 WP_166596748.1 ABC transporter ATP-binding protein -
  AAEO81_RS09835 (AAEO81_09835) - 2112327..2113106 (+) 780 WP_341963166.1 ABC transporter permease -
  AAEO81_RS09840 (AAEO81_09840) - 2113184..2113699 (-) 516 WP_341963168.1 DUF2062 domain-containing protein -
  AAEO81_RS09845 (AAEO81_09845) comA 2113855..2116071 (+) 2217 WP_341963169.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AAEO81_RS09850 (AAEO81_09850) exbB 2116165..2116839 (+) 675 WP_341963171.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AAEO81_RS09855 (AAEO81_09855) - 2116836..2117267 (+) 432 WP_166596753.1 biopolymer transporter ExbD -
  AAEO81_RS09860 (AAEO81_09860) lpxK 2117267..2118262 (+) 996 WP_341963173.1 tetraacyldisaccharide 4'-kinase -
  AAEO81_RS09865 (AAEO81_09865) - 2118280..2118465 (+) 186 WP_003174668.1 Trm112 family protein -
  AAEO81_RS09870 (AAEO81_09870) kdsB 2118462..2119226 (+) 765 WP_341963198.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AAEO81_RS09875 (AAEO81_09875) murB 2119264..2120283 (+) 1020 WP_341963199.1 UDP-N-acetylmuramate dehydrogenase -
  AAEO81_RS09880 (AAEO81_09880) - 2120368..2120958 (+) 591 WP_341963201.1 nucleotidyltransferase family protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24298.56 Da        Isoelectric Point: 7.3253

>NTDB_id=979513 AAEO81_RS09850 WP_341963171.1 2116165..2116839(+) (exbB) [Pseudomonas sp. RC10]
MWELVKSGGWMMLPIILSSIAAVGIIIERLWTLRASRITPPHLLGQVWRWIQDKQLSGEKLKELRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLATLGTIAAMAPLLGLLGTVLGMIDIFSSFTSTGMTGNAGMLAGGIAKALICTA
SGLTVAIPTIFFHRYLQSRVDELVVGMEQEAIKLVEVVQGDRDVDLTDAKPDLKAAARGEGRKK

Nucleotide


Download         Length: 675 bp        

>NTDB_id=979513 AAEO81_RS09850 WP_341963171.1 2116165..2116839(+) (exbB) [Pseudomonas sp. RC10]
GTGTGGGAGCTGGTCAAATCTGGTGGCTGGATGATGCTACCGATCATTTTGAGTTCCATTGCCGCCGTCGGAATCATCAT
CGAGCGTCTTTGGACCTTGCGCGCCAGCCGCATCACGCCACCGCATCTGCTCGGTCAGGTATGGCGCTGGATTCAGGACA
AACAGCTGAGCGGTGAAAAGCTCAAGGAGCTGCGCGCCGATTCGCCGCTGGGTGAAATCCTCGCCGCAGGCCTGGCCAAC
TCCCGTCACGGTCGCGAGATCATGAAAGAGTGCATCGAGGAGGCCGCCGCCCGCGTGATTCACGAACTCGAACGTTATCT
GGCGACCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTGGGTCTGTTGGGCACCGTGCTCGGCATGATCGACATTTTCA
GCTCGTTCACCAGCACCGGCATGACCGGAAACGCGGGCATGCTCGCGGGTGGTATCGCCAAGGCGTTGATCTGCACCGCG
TCCGGCCTGACCGTCGCGATTCCGACGATTTTCTTCCACCGCTACCTGCAAAGCCGTGTGGACGAACTGGTGGTCGGCAT
GGAACAGGAAGCCATCAAATTGGTGGAAGTGGTGCAGGGCGACCGCGACGTCGACCTGACCGATGCCAAGCCTGACCTCA
AGGCCGCCGCTCGTGGCGAGGGCCGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80.476

93.75

0.754

Multiple sequence alignment