Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   ACLQ7P_RS16260 Genome accession   NZ_CP181322
Coordinates   3044805..3045809 (-) Length   334 a.a.
NCBI ID   WP_003229285.1    Uniprot ID   P25144
Organism   Bacillus subtilis subsp. subtilis strain JCK-1398     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3039805..3050809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLQ7P_RS16235 (ACLQ7P_16235) acuA 3040732..3041364 (+) 633 WP_003229296.1 acetoin utilization protein acetyltransferase AcuA -
  ACLQ7P_RS16240 (ACLQ7P_16240) acuB 3041391..3042035 (+) 645 WP_003229294.1 acetoin utilization AcuB family protein -
  ACLQ7P_RS16245 (ACLQ7P_16245) acuC 3042032..3043195 (+) 1164 WP_121591062.1 acetoin utilization protein AcuC -
  ACLQ7P_RS16250 (ACLQ7P_16250) motS 3043206..3043934 (-) 729 WP_095010602.1 flagellar motor protein MotS -
  ACLQ7P_RS16255 (ACLQ7P_16255) motP 3043924..3044742 (-) 819 WP_014477672.1 flagellar motor protein MotP -
  ACLQ7P_RS16260 (ACLQ7P_16260) ccpA 3044805..3045809 (-) 1005 WP_003229285.1 catabolite control protein A Regulator
  ACLQ7P_RS16265 (ACLQ7P_16265) aroX 3046085..3047161 (-) 1077 WP_041339769.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  ACLQ7P_RS16270 (ACLQ7P_16270) ytxJ 3047397..3047723 (-) 327 WP_015714529.1 bacillithiol system redox-active protein YtxJ -
  ACLQ7P_RS16275 (ACLQ7P_16275) ytxH 3047747..3048202 (-) 456 WP_004398549.1 YtxH domain-containing protein -
  ACLQ7P_RS16280 (ACLQ7P_16280) ytxG 3048233..3048655 (-) 423 WP_003229276.1 DUF948 domain-containing protein -
  ACLQ7P_RS16285 (ACLQ7P_16285) murC 3048817..3050115 (-) 1299 WP_003229274.1 UDP-N-acetylmuramate--L-alanine ligase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36940.34 Da        Isoelectric Point: 5.0249

>NTDB_id=979276 ACLQ7P_RS16260 WP_003229285.1 3044805..3045809(-) (ccpA) [Bacillus subtilis subsp. subtilis strain JCK-1398]
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAI
DYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKK
PTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIV
ELPHRIELRKSTKS

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=979276 ACLQ7P_RS16260 WP_003229285.1 3044805..3045809(-) (ccpA) [Bacillus subtilis subsp. subtilis strain JCK-1398]
ATGAGCAATATTACGATCTACGACGTAGCGAGAGAAGCTAATGTAAGCATGGCAACCGTTTCCCGTGTCGTGAACGGCAA
CCCGAATGTAAAACCGACAACGAGGAAAAAAGTCTTGGAAGCCATTGAACGTCTCGGTTACCGTCCAAACGCGGTGGCAA
GAGGACTGGCAAGTAAAAAAACAACAACTGTAGGTGTCATCATTCCCGATATCTCAAGCATTTTCTATTCAGAGCTTGCA
CGCGGAATTGAAGATATCGCGACAATGTATAAATACAATATTATTTTGAGCAACTCTGACCAAAACATGGAGAAAGAACT
GCACTTGTTAAACACAATGCTCGGCAAACAAGTGGACGGCATCGTGTTTATGGGCGGAAACATTACGGACGAGCATGTGG
CGGAATTTAAGCGTTCCCCAGTGCCGATTGTACTTGCCGCTTCTGTAGAAGAGCAGGAGGAAACACCGTCAGTCGCTATC
GATTACGAACAGGCGATTTATGATGCCGTGAAGCTTTTGGTTGATAAAGGACATACAGACATCGCGTTCGTTTCCGGACC
AATGGCAGAACCGATCAACCGTTCGAAAAAACTCCAAGGCTACAAACGTGCGCTTGAAGAAGCGAACCTTCCGTTTAATG
AACAATTTGTAGCTGAAGGGGATTACACATATGATTCCGGACTCGAAGCACTGCAGCATCTGATGAGCCTGGATAAAAAA
CCGACAGCCATTCTTTCTGCAACTGATGAAATGGCACTGGGCATTATCCATGCTGCTCAGGATCAGGGCTTATCCATTCC
GGAGGATCTCGACATTATCGGCTTTGATAATACAAGATTAAGTCTCATGGTTCGTCCGCAGCTGTCAACAGTTGTTCAGC
CGACATACGATATTGGCGCCGTTGCGATGAGACTGCTGACGAAGCTCATGAATAAAGAGCCGGTTGAAGAGCATATCGTC
GAACTGCCGCACCGTATCGAGCTAAGAAAGTCAACCAAGTCATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(5-50)

Periplasmic binding protein-like domain (Peripla_BP_3)

(171-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1ZVV
  PDB 2FEP
  PDB 3OQM
  PDB 3OQN
  PDB 3OQO

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

54.545

98.802

0.539
  ccpA Streptococcus gordonii str. Challis substr. CH1

53.636

98.802

0.53
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

50.602

99.401

0.503