Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   WA044_RS11810 Genome accession   NZ_CP151554
Coordinates   2442063..2442398 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain E69     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2437063..2447398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WA044_RS11790 (WA044_11790) gcvT 2437674..2438774 (-) 1101 WP_058906182.1 glycine cleavage system aminomethyltransferase GcvT -
  WA044_RS11795 (WA044_11795) - 2439197..2440867 (+) 1671 WP_058906183.1 SNF2-related protein -
  WA044_RS11800 (WA044_11800) - 2440885..2441679 (+) 795 WP_014305407.1 YqhG family protein -
  WA044_RS11805 (WA044_11805) sinI 2441856..2442029 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  WA044_RS11810 (WA044_11810) sinR 2442063..2442398 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  WA044_RS11815 (WA044_11815) - 2442446..2443231 (-) 786 WP_015388008.1 TasA family protein -
  WA044_RS11820 (WA044_11820) - 2443295..2443879 (-) 585 WP_012117977.1 signal peptidase I -
  WA044_RS11825 (WA044_11825) tapA 2443851..2444522 (-) 672 WP_058906184.1 amyloid fiber anchoring/assembly protein TapA -
  WA044_RS11830 (WA044_11830) - 2444781..2445110 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  WA044_RS11835 (WA044_11835) - 2445150..2445329 (-) 180 WP_003153093.1 YqzE family protein -
  WA044_RS11840 (WA044_11840) comGG 2445386..2445763 (-) 378 WP_015388005.1 competence type IV pilus minor pilin ComGG Machinery gene
  WA044_RS11845 (WA044_11845) comGF 2445764..2446159 (-) 396 WP_015388004.1 competence type IV pilus minor pilin ComGF -
  WA044_RS11850 (WA044_11850) comGE 2446173..2446487 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  WA044_RS11855 (WA044_11855) comGD 2446471..2446908 (-) 438 WP_058906185.1 competence type IV pilus minor pilin ComGD Machinery gene
  WA044_RS11860 (WA044_11860) comGC 2446898..2447206 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=979121 WA044_RS11810 WP_003153104.1 2442063..2442398(+) (sinR) [Bacillus velezensis strain E69]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=979121 WA044_RS11810 WP_003153104.1 2442063..2442398(+) (sinR) [Bacillus velezensis strain E69]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment