Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   ACM67D_RS02365 Genome accession   NZ_CP181245
Coordinates   451049..451522 (+) Length   157 a.a.
NCBI ID   WP_176549393.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain LNP 16626     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 446049..456522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67D_RS02340 (ACM67D_02340) dnaB 446503..447909 (+) 1407 WP_139595906.1 replicative DNA helicase -
  ACM67D_RS02345 (ACM67D_02345) pilH 448217..448882 (+) 666 WP_139595905.1 GspH/FimT family pseudopilin Machinery gene
  ACM67D_RS02350 (ACM67D_02350) pilV/pilI 448914..449522 (+) 609 WP_139595904.1 type IV pilus modification protein PilV Regulator
  ACM67D_RS02355 (ACM67D_02355) pilJ 449519..450460 (+) 942 WP_139595903.1 PilW family protein Machinery gene
  ACM67D_RS02360 (ACM67D_02360) pilK 450439..451047 (+) 609 WP_139595902.1 pilus assembly PilX family protein Machinery gene
  ACM67D_RS02365 (ACM67D_02365) pilL 451049..451522 (+) 474 WP_176549393.1 PilX family type IV pilin Machinery gene
  ACM67D_RS02370 (ACM67D_02370) - 451592..451900 (-) 309 WP_047920338.1 AzlD family protein -
  ACM67D_RS02375 (ACM67D_02375) - 451897..452605 (-) 709 Protein_463 AzlC family ABC transporter permease -
  ACM67D_RS02380 (ACM67D_02380) dut 452771..453223 (+) 453 WP_047925987.1 dUTP diphosphatase -
  ACM67D_RS02385 (ACM67D_02385) dapC 453301..454488 (+) 1188 WP_139595900.1 succinyldiaminopimelate transaminase -
  ACM67D_RS02390 (ACM67D_02390) yaaA 454800..455579 (+) 780 WP_123812609.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17449.16 Da        Isoelectric Point: 9.7325

>NTDB_id=979112 ACM67D_RS02365 WP_176549393.1 451049..451522(+) (pilL) [Neisseria gonorrhoeae strain LNP 16626]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDDNDTFKSKLGIFVSGYKM
NPKIAKKYSVSVRFVDAEKPRAYRLVGVPNAGTGYTLSVWMNSVGDGYKCRNAASARVYSDTLSADSGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=979112 ACM67D_RS02365 WP_176549393.1 451049..451522(+) (pilL) [Neisseria gonorrhoeae strain LNP 16626]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACGATAATGATACCTTCAAGAGCAAACTGGGAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAGGTTTGTCGATGCGGAAAAACCAAGGGCATACAGGTTGGTCGG
CGTTCCGAACGCGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTAATGCCG
CTTCTGCCCGGGTCTATTCGGACACCTTGTCCGCAGATAGCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

93.631

100

0.936
  pilX Neisseria meningitidis 8013

85.987

100

0.86

Multiple sequence alignment