Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   ACM67D_RS02360 Genome accession   NZ_CP181245
Coordinates   450439..451047 (+) Length   202 a.a.
NCBI ID   WP_139595902.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain LNP 16626     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445439..456047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67D_RS02335 (ACM67D_02335) - 445758..446339 (-) 582 WP_003701053.1 superoxide dismutase -
  ACM67D_RS02340 (ACM67D_02340) dnaB 446503..447909 (+) 1407 WP_139595906.1 replicative DNA helicase -
  ACM67D_RS02345 (ACM67D_02345) pilH 448217..448882 (+) 666 WP_139595905.1 GspH/FimT family pseudopilin Machinery gene
  ACM67D_RS02350 (ACM67D_02350) pilV/pilI 448914..449522 (+) 609 WP_139595904.1 type IV pilus modification protein PilV Regulator
  ACM67D_RS02355 (ACM67D_02355) pilJ 449519..450460 (+) 942 WP_139595903.1 PilW family protein Machinery gene
  ACM67D_RS02360 (ACM67D_02360) pilK 450439..451047 (+) 609 WP_139595902.1 pilus assembly PilX family protein Machinery gene
  ACM67D_RS02365 (ACM67D_02365) pilL 451049..451522 (+) 474 WP_176549393.1 PilX family type IV pilin Machinery gene
  ACM67D_RS02370 (ACM67D_02370) - 451592..451900 (-) 309 WP_047920338.1 AzlD family protein -
  ACM67D_RS02375 (ACM67D_02375) - 451897..452605 (-) 709 Protein_463 AzlC family ABC transporter permease -
  ACM67D_RS02380 (ACM67D_02380) dut 452771..453223 (+) 453 WP_047925987.1 dUTP diphosphatase -
  ACM67D_RS02385 (ACM67D_02385) dapC 453301..454488 (+) 1188 WP_139595900.1 succinyldiaminopimelate transaminase -
  ACM67D_RS02390 (ACM67D_02390) yaaA 454800..455579 (+) 780 WP_123812609.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22128.03 Da        Isoelectric Point: 7.5808

>NTDB_id=979111 ACM67D_RS02360 WP_139595902.1 450439..451047(+) (pilK) [Neisseria gonorrhoeae strain LNP 16626]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCENGLCTAVNVRTNGANEETFDNIVVKGKPTVEAVKRSCPAKSGKNSTDLCIDNQGVEYKKGTASVSKMPR
YIIEYLGEKNNQKIYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=979111 ACM67D_RS02360 WP_139595902.1 450439..451047(+) (pilK) [Neisseria gonorrhoeae strain LNP 16626]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACGTTTAGCGAAAACTGTGAAAACGGCCTGTGTACCGCAGTGAATGTACGGACAAATGGTGCTAATGA
AGAGACTTTTGACAATATCGTGGTGAAAGGCAAGCCTACCGTTGAGGCCGTGAAGCGTTCTTGCCCTGCAAAGTCTGGCA
AAAATTCTACCGACCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGGACGGCAAGCGTCAGCAAAATGCCGCGT
TATATTATCGAATATTTGGGCGAGAAGAATAACCAAAAGATTTACAGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTTCAATCTTATGTAGGTAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-197)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

93.596

100

0.941

Multiple sequence alignment