Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AAEO79_RS00040 Genome accession   NZ_CP151540
Coordinates   9447..9953 (+) Length   168 a.a.
NCBI ID   WP_071863072.1    Uniprot ID   -
Organism   Enterococcus devriesei strain Ed-CK-24     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4447..14953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEO79_RS00030 (AAEO79_00030) gyrA 6392..8917 (+) 2526 WP_313631104.1 DNA gyrase subunit A -
  AAEO79_RS00035 (AAEO79_00035) rpsF 9100..9402 (+) 303 WP_067626613.1 30S ribosomal protein S6 -
  AAEO79_RS00040 (AAEO79_00040) ssb 9447..9953 (+) 507 WP_071863072.1 single-stranded DNA-binding protein Machinery gene
  AAEO79_RS00045 (AAEO79_00045) rpsR 9977..10213 (+) 237 WP_071863071.1 30S ribosomal protein S18 -
  AAEO79_RS00050 (AAEO79_00050) - 10334..12298 (+) 1965 WP_379946217.1 DHH family phosphoesterase -
  AAEO79_RS00055 (AAEO79_00055) rplI 12295..12747 (+) 453 WP_071863069.1 50S ribosomal protein L9 -
  AAEO79_RS00060 (AAEO79_00060) dnaB 12874..14235 (+) 1362 WP_379946218.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18655.23 Da        Isoelectric Point: 4.7200

>NTDB_id=979006 AAEO79_RS00040 WP_071863072.1 9447..9953(+) (ssb) [Enterococcus devriesei strain Ed-CK-24]
MINNVVLVGRLTKDPDLRYTANGTGVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
NYENQQGQRVYVTEVVAENFQLLESRSANEQRQQNPSSNDSFQGGGNNFNNNSNQSSQSAKNTMPDFDRDSDPFSGSSID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=979006 AAEO79_RS00040 WP_071863072.1 9447..9953(+) (ssb) [Enterococcus devriesei strain Ed-CK-24]
TTGATTAATAATGTTGTACTAGTTGGTCGTTTAACAAAGGATCCTGATTTACGTTATACTGCAAATGGGACAGGTGTTGC
AACGTTTACTTTGGCTGTGAATCGTAATTTTACGAATCAAAGCGGAAATCGCGAAGCAGACTTTATCAATTGTGTGATTT
GGCGGAAATCGGCTGAAACTTTAGCTAATTATGCGCGCAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACCAGA
AATTATGAAAATCAGCAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGAACTTCCAGTTATTGGAATCTCGTTC
TGCTAATGAACAACGTCAACAGAACCCAAGTTCTAATGATAGTTTCCAAGGCGGAGGGAATAATTTTAACAACAATAGTA
ATCAATCCTCTCAGTCAGCTAAGAACACTATGCCTGACTTCGATCGAGATTCAGATCCATTTAGTGGGTCCTCAATCGAC
ATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.112

100

0.637
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.062

100

0.601
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

63.095

0.381

Multiple sequence alignment