Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   R8619_RS06960 Genome accession   NZ_AP026918
Coordinates   1360908..1362869 (-) Length   653 a.a.
NCBI ID   WP_000748866.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700009     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1355908..1367869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8619_RS06935 (PC0009_13710) - 1356629..1357795 (-) 1167 WP_000521384.1 MalY/PatB family protein -
  R8619_RS06940 (PC0009_13720) - 1357803..1358897 (-) 1095 WP_000031964.1 cystathionine gamma-synthase -
  R8619_RS06945 - 1359055..1359777 (-) 723 WP_001010371.1 ABC transporter ATP-binding protein -
  R8619_RS06950 - 1359964..1360485 (-) 522 Protein_1372 ABC transporter transmembrane domain-containing protein -
  R8619_RS06955 (PC0009_13740) - 1360503..1360736 (-) 234 WP_000769000.1 hypothetical protein -
  R8619_RS06960 (PC0009_13750) amiA3 1360908..1362869 (-) 1962 WP_000748866.1 peptide ABC transporter substrate-binding protein Regulator
  R8619_RS06965 (PC0009_13760) - 1363070..1364692 (-) 1623 WP_000017793.1 polysaccharide biosynthesis protein -
  R8619_RS06970 (PC0009_13770) - 1364798..1366243 (+) 1446 WP_000590315.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  R8619_RS06975 (PC0009_13780) - 1366289..1366483 (-) 195 WP_000051195.1 CsbD family protein -
  R8619_RS06980 (PC0009_13790) - 1366584..1367233 (-) 650 Protein_1378 DUF1803 domain-containing protein -
  R8619_RS06985 (PC0009_13800) - 1367217..1367729 (-) 513 WP_000892255.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 73039.38 Da        Isoelectric Point: 4.7684

>NTDB_id=97799 R8619_RS06960 WP_000748866.1 1360908..1362869(-) (amiA3) [Streptococcus pneumoniae strain PZ900700009]
MKKSKSKYLTLAGFVLGTGVLLSACGNSSTVSKTYNYVYSSDPSSLNYLAENRATTNDIVTNLVDGLMENDQYGNYVPSL
AEDWTVSQDGLTYTYKLRKDAKWFTSEGEEYAPVTAQDFVTGLQYAADKKSEALYLVQDSVAGLDDYITGKTSDFSTVGI
KALDDQTVQYTLARPEPYWNSKTTSTILFPVNADFLKSKGDDFGKVDPANILYSGPFLMKAFVSKSVIEYKKNPNYWDAK
NVFVDDVKLTYYDGSDQDALVRNFTDGAYSYARLYPNSSSFEGIKEKYKDDIIYSMQDATSYYWNFNLDRQAYKFTSKTT
DIEKKSTQEAVLNKNFRQAINFAYDRTSYGAQTQGEDGATKILRNLVVPPTFVSIKGKDFGEVVASKMVNNYGKEWQGIN
FADGQDPYYNPEKAKAKFAEAKKELEAKGVQFPIHLDATVDQASKKGIQEVSSMKQSIEAALGTENVVIDIQQLSTEDYD
NSSYLAQTAIQKDYDLYNGGWSPDYLDPSTYLDIFSVKNGGVLQNLGLDPGEANDKAKAVGLDTYTQMLEEANKEQDPAK
RYEKYADIQAWLIDSSLAIPNVSLGGTPSLRKTVPFSAPYSLAGNKGVESYKYLKVQDKIVTTDEYAKAREKWLKEKEES
NKKAQEELAKHVK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=97799 R8619_RS06960 WP_000748866.1 1360908..1362869(-) (amiA3) [Streptococcus pneumoniae strain PZ900700009]
ATGAAAAAGTCTAAGAGCAAATATCTAACCTTGGCAGGTTTTGTCCTGGGTACAGGAGTTTTATTGAGCGCGTGTGGAAA
TTCTAGCACTGTATCAAAAACCTATAACTATGTTTATTCAAGTGATCCATCTAGTTTGAACTATCTAGCAGAAAACCGCG
CAACAACCAATGATATTGTGACCAATCTGGTAGATGGTCTCATGGAAAATGACCAATATGGGAACTATGTGCCATCCTTG
GCAGAAGATTGGACTGTTTCTCAGGATGGTTTGACCTATACCTACAAACTTCGTAAGGATGCCAAGTGGTTTACTTCTGA
GGGAGAAGAATATGCACCTGTAACTGCCCAGGATTTTGTGACAGGATTGCAATATGCAGCTGATAAAAAATCAGAAGCCT
TGTATCTAGTGCAGGACTCTGTTGCAGGTTTGGATGACTATATCACTGGTAAAACAAGCGACTTTTCAACTGTCGGTATC
AAGGCTCTTGATGATCAAACCGTTCAATACACCTTGGCTCGACCAGAACCTTACTGGAACTCAAAAACAACCTCAACCAT
TCTTTTCCCAGTCAATGCAGATTTCTTGAAATCAAAAGGGGATGATTTTGGCAAGGTAGACCCTGCTAATATTTTGTACA
GTGGACCTTTCTTGATGAAAGCTTTTGTTTCAAAATCTGTCATCGAATACAAGAAAAATCCTAACTACTGGGATGCTAAA
AATGTCTTTGTAGACGATGTGAAATTGACCTACTATGATGGTAGTGACCAAGATGCTCTTGTTCGTAACTTTACAGACGG
AGCCTATAGCTATGCCCGTCTCTATCCGAATAGTTCAAGTTTTGAAGGGATTAAAGAAAAATACAAAGATGATATCATCT
ACAGTATGCAGGATGCTACGTCTTATTACTGGAATTTTAACCTAGATAGACAAGCTTATAAATTTACTTCTAAGACGACC
GACATTGAAAAGAAATCAACTCAGGAAGCAGTTCTTAATAAAAACTTCCGTCAAGCTATTAACTTTGCCTATGATCGTAC
CTCCTATGGGGCTCAAACTCAGGGAGAAGACGGAGCGACTAAGATTTTGCGTAACTTGGTTGTTCCTCCAACCTTTGTAA
GTATCAAAGGAAAAGATTTTGGTGAAGTAGTAGCCTCTAAGATGGTCAATAATTATGGTAAGGAATGGCAAGGCATCAAC
TTTGCGGATGGTCAAGACCCTTACTACAATCCTGAGAAAGCCAAGGCTAAATTTGCTGAGGCCAAGAAAGAGCTAGAAGC
TAAGGGAGTTCAATTCCCTATTCATTTGGATGCGACAGTTGACCAAGCTTCTAAGAAGGGGATTCAAGAAGTAAGCTCCA
TGAAGCAATCTATTGAAGCAGCTTTAGGTACGGAGAACGTCGTTATTGATATCCAACAGTTATCAACAGAGGACTATGAT
AACTCAAGTTACCTTGCTCAGACTGCTATTCAGAAAGACTACGACCTTTACAATGGTGGTTGGAGTCCTGACTACTTAGA
TCCATCAACCTATCTTGATATCTTTAGTGTCAAGAATGGTGGGGTTCTACAAAATCTTGGACTCGACCCTGGTGAAGCCA
ATGACAAGGCTAAGGCAGTTGGACTTGACACTTATACTCAAATGTTGGAAGAGGCTAATAAGGAGCAAGACCCAGCCAAA
CGTTATGAGAAATATGCTGATATTCAAGCATGGTTGATAGATAGTTCTCTAGCGATTCCAAATGTTTCATTAGGTGGAAC
GCCTAGCTTGAGAAAAACAGTTCCTTTCTCAGCACCTTATTCATTGGCTGGTAATAAAGGGGTTGAATCATATAAATACC
TCAAAGTACAAGATAAGATTGTCACAACAGACGAATATGCAAAAGCCAGAGAAAAATGGTTGAAAGAAAAAGAAGAATCC
AATAAAAAAGCCCAAGAAGAATTGGCAAAACATGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

56.601

100

0.571
  amiA3 Streptococcus thermophilus LMD-9

56.601

100

0.571
  amiA Streptococcus salivarius strain HSISS4

56.773

100

0.571

Multiple sequence alignment