Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   R8563_RS09495 Genome accession   NZ_AP026917
Coordinates   1829432..1830442 (-) Length   336 a.a.
NCBI ID   WP_000990607.1    Uniprot ID   A0A0B7LZL8
Organism   Streptococcus pneumoniae strain PZ900700007     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1824432..1835442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8563_RS09465 (PC0007_18450) - 1824465..1825679 (-) 1215 WP_000666469.1 pyridoxal phosphate-dependent aminotransferase -
  R8563_RS09470 - 1825835..1826128 (-) 294 WP_000977374.1 hypothetical protein -
  R8563_RS09475 (PC0007_18460) - 1826277..1826729 (+) 453 WP_000079148.1 universal stress protein -
  R8563_RS09480 (PC0007_18470) - 1826764..1828152 (-) 1389 WP_000453138.1 Cof-type HAD-IIB family hydrolase -
  R8563_RS09485 (PC0007_18480) - 1828218..1829180 (+) 963 WP_001124782.1 asparaginase -
  R8563_RS09490 (PC0007_18490) - 1829177..1829368 (-) 192 WP_001092051.1 hypothetical protein -
  R8563_RS09495 (PC0007_18500) ccpA 1829432..1830442 (-) 1011 WP_000990607.1 catabolite control protein A Regulator
  R8563_RS09500 (PC0007_18510) - 1830867..1831466 (-) 600 WP_000866722.1 response regulator transcription factor -
  R8563_RS09505 (PC0007_18520) - 1831468..1832565 (-) 1098 WP_000893548.1 sensor histidine kinase -
  R8563_RS09510 (PC0007_18530) - 1832565..1833302 (-) 738 WP_000832836.1 ABC transporter permease -
  R8563_RS09515 (PC0007_18540) - 1833304..1834188 (-) 885 WP_000367212.1 ABC transporter ATP-binding protein -
  R8563_RS09520 (PC0007_18550) - 1834175..1834369 (-) 195 WP_000708872.1 hypothetical protein -
  R8563_RS09525 (PC0007_18560) - 1834366..1834557 (-) 192 WP_000791802.1 hypothetical protein -

Sequence


Protein


Download         Length: 336 a.a.        Molecular weight: 37073.01 Da        Isoelectric Point: 5.3212

>NTDB_id=97744 R8563_RS09495 WP_000990607.1 1829432..1830442(-) (ccpA) [Streptococcus pneumoniae strain PZ900700007]
MNADDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNITNGYFS
SLAKGIDDIAEMYKYNIVLANSDEDNEKEVSVVNTLFSKQVDGIIYMGYHLTDKIRSEFSRSRTPIVLAGTVDVEHQLPS
VNIDYKQATIDAVSYLAKENERIAFVSGPLVDDINGKVRLVGYKETLKKAGITYSEGLVFESKYSYDDGYALAERLISSN
ATAAVVTGDELAAGVLNGLADKGVSVPEDFEIITSDDSQISRFTRPNLTTIAQPLYDLGAISMRMLTKIMHKEELEEREV
LLPHGLTERSSTRKRK

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=97744 R8563_RS09495 WP_000990607.1 1829432..1830442(-) (ccpA) [Streptococcus pneumoniae strain PZ900700007]
ATGAATGCAGATGATACAGTAACCATTTATGATGTCGCTCGTGAAGCAGGTGTTTCCATGGCGACGGTCAGCCGTGTGGT
CAATGGCAATAAAAATGTAAAAGAGAATACCCGTAAAAAAGTGCTAGAGGTAATTGATCGTTTGGATTATCGTCCAAATG
CAGTTGCGCGTGGTCTTGCAAGTAAAAAGACAACCACTGTCGGTGTCGTGATTCCAAATATTACCAATGGTTATTTTTCG
AGTTTGGCTAAGGGGATTGATGATATTGCAGAAATGTACAAGTACAATATTGTCCTAGCTAATAGCGATGAAGATAACGA
GAAAGAAGTTTCTGTTGTCAATACCCTCTTTTCAAAGCAGGTAGATGGCATTATCTATATGGGTTATCACTTGACAGATA
AAATTCGCTCAGAATTTTCGCGTTCACGTACTCCGATTGTTCTCGCAGGAACTGTCGATGTTGAGCACCAGTTGCCAAGT
GTCAATATTGACTATAAGCAAGCAACAATTGATGCAGTGAGTTACCTTGCTAAAGAAAATGAGCGTATTGCTTTCGTTAG
CGGTCCGCTAGTGGATGACATCAATGGTAAGGTTCGTTTAGTTGGCTACAAGGAAACCTTGAAAAAAGCAGGAATCACTT
ATAGTGAGGGTTTGGTATTTGAATCTAAATATAGCTATGATGATGGTTACGCCTTAGCAGAGCGTTTGATTTCATCAAAT
GCAACTGCAGCAGTTGTGACAGGTGATGAGTTGGCAGCAGGAGTCTTGAACGGTTTGGCTGATAAGGGTGTTTCTGTGCC
AGAAGATTTTGAAATTATTACTAGTGATGATTCACAAATCTCACGCTTTACCCGTCCAAACTTGACAACGATTGCCCAAC
CTCTTTATGACCTTGGTGCCATTAGTATGCGTATGTTGACCAAGATTATGCATAAGGAAGAGTTGGAAGAACGTGAAGTT
CTCTTACCTCATGGTTTGACAGAACGTAGCTCAACACGAAAACGTAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0B7LZL8

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

99.702

100

0.997

  ccpA Streptococcus gordonii str. Challis substr. CH1

87.126

99.405

0.866

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

57.704

98.512

0.568


Multiple sequence alignment