Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   ACM3H0_RS09820 Genome accession   NZ_CP180685
Coordinates   1864612..1865121 (-) Length   169 a.a.
NCBI ID   WP_000392204.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain M14     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 1859612..1870121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM3H0_RS09795 (ACM3H0_09795) tsaD 1860121..1861131 (-) 1011 WP_000655092.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  ACM3H0_RS09800 (ACM3H0_09800) rimI 1861207..1861614 (-) 408 WP_000445944.1 ribosomal protein S18-alanine N-acetyltransferase -
  ACM3H0_RS09805 (ACM3H0_09805) tsaB 1861616..1862308 (-) 693 WP_000978603.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  ACM3H0_RS09810 (ACM3H0_09810) - 1862487..1862717 (+) 231 WP_000639570.1 DNA-dependent RNA polymerase subunit epsilon -
  ACM3H0_RS09815 (ACM3H0_09815) rnjA 1862771..1864450 (+) 1680 WP_000065495.1 ribonuclease J1 -
  ACM3H0_RS09820 (ACM3H0_09820) lytF 1864612..1865121 (-) 510 WP_000392204.1 CHAP domain-containing protein Regulator
  ACM3H0_RS09825 (ACM3H0_09825) glnA 1865269..1866615 (-) 1347 WP_000156223.1 type I glutamate--ammonia ligase -
  ACM3H0_RS09830 (ACM3H0_09830) - 1866649..1867020 (-) 372 WP_000664341.1 MerR family transcriptional regulator -
  ACM3H0_RS09835 (ACM3H0_09835) - 1867100..1867639 (-) 540 WP_000854121.1 FUSC family protein -
  ACM3H0_RS09840 (ACM3H0_09840) - 1867902..1869098 (-) 1197 WP_001096752.1 phosphoglycerate kinase -
  ACM3H0_RS09845 (ACM3H0_09845) - 1869233..1870102 (-) 870 WP_000858923.1 5'-nucleotidase, lipoprotein e(P4) family -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18334.24 Da        Isoelectric Point: 4.4055

>NTDB_id=976066 ACM3H0_RS09820 WP_000392204.1 1864612..1865121(-) (lytF) [Streptococcus agalactiae strain M14]
MEENMNIKQLKSKTMLGTVALVSAFSFASTNADANTYNYAVDVDYLASAEEIAQAHPASNTFPLGQCTWGVKEMATWAGN
WWGNGGDWAASATSAGYTVGTQPRVGSIVCWTDGSYGHVAYVTAVDPVTNKIQVLESNYAGHQWIDNYRGWFDPQNTATP
GVVSYIYPN

Nucleotide


Download         Length: 510 bp        

>NTDB_id=976066 ACM3H0_RS09820 WP_000392204.1 1864612..1865121(-) (lytF) [Streptococcus agalactiae strain M14]
ATGGAGGAAAACATGAACATAAAACAATTAAAGTCTAAAACAATGCTTGGAACAGTGGCTTTGGTGTCCGCTTTTTCATT
TGCTTCAACAAATGCAGATGCGAATACATATAACTATGCAGTAGATGTAGACTACCTAGCAAGTGCGGAGGAAATTGCTC
AAGCACATCCAGCTAGTAATACGTTTCCACTAGGTCAATGCACATGGGGTGTAAAGGAGATGGCAACATGGGCAGGTAAC
TGGTGGGGAAACGGTGGTGATTGGGCTGCGAGCGCCACATCAGCTGGTTATACAGTAGGAACACAACCTCGCGTGGGTTC
TATCGTATGTTGGACTGATGGTAGTTATGGACATGTGGCTTATGTTACAGCTGTAGATCCTGTCACTAATAAAATTCAGG
TTTTAGAATCTAATTATGCAGGTCATCAATGGATTGATAATTATCGTGGTTGGTTTGATCCACAAAATACAGCGACACCA
GGGGTAGTTAGCTACATTTATCCGAATTAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(60-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

57.576

78.107

0.45
  lytF Streptococcus gordonii str. Challis substr. CH1

57.576

78.107

0.45
  SMU.836 Streptococcus mutans UA159

54.331

75.148

0.408