Detailed information NTG0976049

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: WMB06_RS08165
• Genome accession: NZ_CP151275
• Coordinates: 1715619..1716998 (+)
• Length: 459 a.a.
• NCBI ID: WP_341678641.1
• Uniprot ID: -
• Organism: Niveibacterium sp. SC-1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1710619..1721998

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WMB06_RS08140 (WMB06_08140)	-	1710860..1711231 (-)	372	WP_341678635.1	response regulator	-
WMB06_RS08145 (WMB06_08145)	-	1711243..1712379 (-)	1137	WP_341678636.1	methyl-accepting chemotaxis protein	-
WMB06_RS08150 (WMB06_08150)	-	1712626..1713783 (+)	1158	WP_341678637.1	methionine aminotransferase	-
WMB06_RS08155 (WMB06_08155)	-	1713836..1714075 (+)	240	WP_341678639.1	PP0621 family protein	-
WMB06_RS08160 (WMB06_08160)	-	1714072..1715622 (+)	1551	WP_341678640.1	HAMP domain-containing sensor histidine kinase	-
WMB06_RS08165 (WMB06_08165)	pilR	1715619..1716998 (+)	1380	WP_341678641.1	sigma-54 dependent transcriptional regulator	Regulator
WMB06_RS08170 (WMB06_08170)	ampD	1717072..1717602 (+)	531	WP_341679402.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
WMB06_RS08175 (WMB06_08175)	-	1717841..1720708 (+)	2868	WP_341678642.1	ribonucleoside-diphosphate reductase subunit alpha	-

Sequence

Protein

• Length: 459 a.a.
• Molecular weight: 50328.55 Da
• Isoelectric Point: 5.2297

>NTDB_id=976049 WMB06_RS08165 WP_341678641.1 1715619..1716998(+) (pilR) [Niveibacterium sp. SC-1]
MSANDRRTRFESTVLIVDDEDDIRELLELTCLRMGLGAETAANLKEARDKLAGPQRFKLCLTDMRLPDGEGIELVREVAA
GHPELPIAVITAHGSMENAVTALKAGAFDYLSKPVSLEQLRALVKSVLELPARTQESRPVAGSALTGDSPAMRQARAMIE
KLARSLAPVYISGESGSGKERAARLVHDLGPRAGKPFVAVNCGAIPENLVESEFFGYRKGAFTGAESDRDGFFQAASGGT
LFLDEVGDLPLPMQVKLLRAIQEKRVRRVGDTSEQAVDLRIISATHRNLKDLVEQGRFRQDLFYRLNVIELRMPALRERL
EDIPALVDTLLARLAAEGGSVPRLSPGALKALMAYAFPGNVRELENILERALALHQGEEIELDDLHLEPTEDERGEGGVP
GGGVALERESLQDYLDRVERMAILDALEKTGGNRTAASRLLGVTFRSLRYRMERLGMKD

Nucleotide

• Length: 1380 bp

>NTDB_id=976049 WMB06_RS08165 WP_341678641.1 1715619..1716998(+) (pilR) [Niveibacterium sp. SC-1]
ATGAGCGCCAATGACCGACGCACGCGTTTCGAATCGACTGTACTGATCGTCGACGACGAGGACGATATCCGCGAACTGCT
GGAACTGACCTGCCTGCGCATGGGGTTGGGGGCCGAGACCGCGGCGAATCTGAAAGAGGCGCGTGACAAGCTCGCGGGCC
CGCAGCGCTTCAAGCTTTGCCTGACGGACATGCGCCTGCCCGACGGCGAGGGCATCGAGCTGGTGCGCGAGGTGGCCGCC
GGCCATCCCGAGCTGCCCATCGCCGTGATCACCGCGCATGGCAGCATGGAGAACGCGGTCACGGCGCTCAAGGCGGGGGC
TTTCGACTACCTTTCCAAGCCGGTGTCGCTGGAGCAGCTGCGTGCCTTGGTGAAGTCGGTGCTCGAATTGCCCGCACGCA
CCCAGGAAAGTCGTCCGGTCGCCGGCAGCGCGCTGACCGGGGATTCGCCGGCCATGCGGCAGGCCCGCGCGATGATCGAA
AAGCTCGCGCGCAGTCTGGCGCCTGTTTATATCAGTGGCGAGTCCGGTAGCGGCAAGGAGCGCGCCGCGCGCCTGGTCCA
CGATCTGGGGCCGCGGGCAGGGAAACCCTTTGTGGCGGTGAACTGCGGCGCCATTCCGGAGAATCTGGTCGAGTCTGAAT
TCTTCGGTTATCGCAAGGGTGCCTTCACCGGTGCGGAGTCGGACCGCGACGGCTTCTTCCAGGCCGCCAGCGGCGGCACG
CTCTTCCTCGATGAGGTCGGCGATCTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGCGGGTGCG
GCGCGTGGGCGACACCTCGGAGCAGGCGGTGGATCTGCGGATCATCAGCGCGACCCACCGGAACCTCAAGGACCTGGTGG
AGCAGGGGCGGTTCCGCCAGGACCTCTTCTACCGGCTGAACGTGATCGAGCTGCGCATGCCGGCCCTGCGCGAACGCCTC
GAGGACATCCCCGCGCTGGTCGACACACTGCTGGCGCGTCTGGCGGCAGAGGGGGGCTCGGTGCCGCGGCTGTCGCCCGG
CGCGCTGAAAGCGCTGATGGCCTACGCCTTCCCGGGCAATGTGCGCGAGCTGGAGAACATTCTTGAGCGTGCGCTGGCGC
TGCATCAGGGCGAAGAGATCGAGCTGGACGACCTGCATCTGGAGCCGACGGAAGACGAGCGAGGCGAGGGCGGCGTGCCG
GGCGGAGGGGTTGCGCTGGAGCGCGAGTCCCTGCAGGACTATCTTGACCGCGTCGAGCGCATGGCGATCCTCGACGCCCT
GGAGAAGACCGGCGGCAATCGCACGGCTGCCTCGCGCCTGCTTGGCGTCACCTTCCGTTCGCTGCGCTACCGCATGGAGC
GTCTGGGGATGAAGGACTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (415-454)

• Sigma-54 interaction domain (Sigma54_activat) (146-311)

• Response regulator receiver domain (Response_reg) (14-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	58.559	96.732	0.566
pilR	Acinetobacter baumannii strain A118	44.662	100	0.447