Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   WMB06_RS01525 Genome accession   NZ_CP151275
Coordinates   316429..316788 (+) Length   119 a.a.
NCBI ID   WP_341679461.1    Uniprot ID   -
Organism   Niveibacterium sp. SC-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 311429..321788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMB06_RS01500 (WMB06_01500) mgtE 311839..313284 (+) 1446 WP_341677297.1 magnesium transporter -
  WMB06_RS01505 (WMB06_01505) hemL 313281..314561 (-) 1281 WP_341677298.1 glutamate-1-semialdehyde 2,1-aminomutase -
  WMB06_RS01510 (WMB06_01510) thiE 314558..315199 (-) 642 WP_341677299.1 thiamine phosphate synthase -
  WMB06_RS01515 (WMB06_01515) - 315196..315978 (-) 783 WP_341677300.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase -
  WMB06_RS01520 (WMB06_01520) - 316082..316270 (+) 189 WP_341677301.1 rubredoxin -
  WMB06_RS01525 (WMB06_01525) pilG 316429..316788 (+) 360 WP_341679461.1 response regulator Regulator
  WMB06_RS01530 (WMB06_01530) - 316815..317180 (+) 366 WP_341677302.1 response regulator -
  WMB06_RS01535 (WMB06_01535) - 317234..317752 (+) 519 WP_341677303.1 chemotaxis protein CheW -
  WMB06_RS01540 (WMB06_01540) - 317833..319974 (+) 2142 WP_341677304.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 12954.03 Da        Isoelectric Point: 7.2432

>NTDB_id=976043 WMB06_RS01525 WP_341679461.1 316429..316788(+) (pilG) [Niveibacterium sp. SC-1]
MVIDDSNTIRRSAEIFLAQAGCQVLLAEDGFDALAKISDHHPDIVFVDIMMPRLDGYQTCALIKKNPKFAATPVIMLSSK
DGLFDRARGRMVGSNEYLTKPFTKDSLIKAVAAHAGTAV

Nucleotide


Download         Length: 360 bp        

>NTDB_id=976043 WMB06_RS01525 WP_341679461.1 316429..316788(+) (pilG) [Niveibacterium sp. SC-1]
ATGGTGATCGATGATTCGAACACCATCCGTCGCAGCGCCGAGATCTTTCTTGCCCAGGCCGGCTGTCAGGTCCTTCTGGC
CGAGGACGGCTTCGACGCGCTCGCCAAGATCTCCGATCACCATCCCGACATCGTGTTTGTCGACATCATGATGCCCCGTC
TGGACGGGTATCAGACCTGTGCGCTGATCAAGAAGAACCCGAAGTTCGCGGCCACGCCGGTCATCATGCTGTCGTCCAAG
GACGGCCTTTTCGACCGCGCCCGCGGCCGGATGGTCGGTTCCAATGAATATCTGACCAAACCCTTTACCAAAGACAGTCT
TATCAAGGCAGTCGCCGCGCACGCGGGCACTGCTGTCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(1-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

66.667

98.319

0.655
  pilH Synechocystis sp. PCC 6803

40.541

93.277

0.378
  chiS Vibrio cholerae strain A1552

38.596

95.798

0.37

Multiple sequence alignment