Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   AADP84_RS06170 Genome accession   NZ_CP151186
Coordinates   1250281..1250727 (+) Length   148 a.a.
NCBI ID   WP_072324131.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain Dubai-25     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1245281..1255727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADP84_RS06135 (AADP84_06135) - 1245774..1245974 (+) 201 WP_000087563.1 YqgQ family protein -
  AADP84_RS06140 (AADP84_06140) - 1245974..1246960 (+) 987 WP_000161316.1 ROK family glucokinase -
  AADP84_RS06145 (AADP84_06145) - 1246960..1247289 (+) 330 WP_001018874.1 MTH1187 family thiamine-binding protein -
  AADP84_RS06150 (AADP84_06150) - 1247286..1247909 (+) 624 WP_031787263.1 MBL fold metallo-hydrolase -
  AADP84_RS06155 (AADP84_06155) comGA 1247961..1248935 (+) 975 WP_031787262.1 competence type IV pilus ATPase ComGA Machinery gene
  AADP84_RS06160 (AADP84_06160) comGB 1248907..1249977 (+) 1071 WP_031787261.1 competence type IV pilus assembly protein ComGB Machinery gene
  AADP84_RS06165 (AADP84_06165) comGC 1249992..1250303 (+) 312 WP_000921699.1 competence type IV pilus major pilin ComGC Machinery gene
  AADP84_RS06170 (AADP84_06170) comGD 1250281..1250727 (+) 447 WP_072324131.1 competence type IV pilus minor pilin ComGD Machinery gene
  AADP84_RS06175 (AADP84_06175) comGE 1250714..1251013 (+) 300 WP_031787259.1 hypothetical protein Machinery gene
  AADP84_RS06180 (AADP84_06180) comGF 1250973..1251428 (+) 456 WP_078097699.1 competence type IV pilus minor pilin ComGF Machinery gene
  AADP84_RS06185 (AADP84_06185) - 1251527..1251676 (+) 150 WP_072324192.1 hypothetical protein -
  AADP84_RS06190 (AADP84_06190) - 1251663..1252187 (+) 525 WP_031787256.1 shikimate kinase -
  AADP84_RS06195 (AADP84_06195) gcvT 1252344..1253435 (+) 1092 WP_000093342.1 glycine cleavage system aminomethyltransferase GcvT -
  AADP84_RS06200 (AADP84_06200) gcvPA 1253454..1254800 (+) 1347 WP_031787255.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17319.54 Da        Isoelectric Point: 10.2250

>NTDB_id=975756 AADP84_RS06170 WP_072324131.1 1250281..1250727(+) (comGD) [Staphylococcus argenteus strain Dubai-25]
MEKLLQIRKQQAFTLIEMVVVMMIVSCFLLLSMTSNSLKDFKVINDESNIISLITELNYIKSKAIANQSFINVRFYENSD
TIKVVEKNKIYYLKLKVGKIINVAKVDSIYFDKHGNINKFGSISIEKNNKVYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=975756 AADP84_RS06170 WP_072324131.1 1250281..1250727(+) (comGD) [Staphylococcus argenteus strain Dubai-25]
ATGGAGAAGCTATTGCAAATTAGAAAACAACAAGCATTTACACTTATTGAAATGGTTGTTGTAATGATGATTGTTAGTTG
TTTTCTTCTATTGAGTATGACATCAAATAGTTTAAAAGATTTCAAAGTTATCAATGATGAATCGAATATCATTTCATTAA
TTACTGAACTGAATTATATTAAATCAAAGGCAATTGCTAATCAAAGTTTTATTAATGTAAGATTTTATGAAAATAGTGAC
ACAATTAAAGTAGTTGAGAAAAATAAGATCTATTATTTAAAGTTAAAAGTTGGAAAAATAATTAATGTTGCGAAAGTGGA
TTCGATTTATTTTGATAAACATGGAAACATTAATAAGTTTGGTAGCATTTCGATTGAAAAAAACAACAAGGTTTATAGAA
TAATATTTCATATTGAAAAAGGAAGAATTCGTTATGAAAAATTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

78.378

100

0.784
  comGD Staphylococcus aureus N315

78.378

100

0.784

Multiple sequence alignment