Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AADP84_RS05930 Genome accession   NZ_CP151186
Coordinates   1203664..1204365 (+) Length   233 a.a.
NCBI ID   WP_072324129.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain Dubai-25     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1198664..1209365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADP84_RS05895 (AADP84_05895) yqeH 1199191..1200291 (+) 1101 WP_341595707.1 ribosome biogenesis GTPase YqeH -
  AADP84_RS05900 (AADP84_05900) aroE 1200304..1201110 (+) 807 WP_031787284.1 shikimate dehydrogenase -
  AADP84_RS05905 (AADP84_05905) yhbY 1201115..1201405 (+) 291 WP_000955238.1 ribosome assembly RNA-binding protein YhbY -
  AADP84_RS05910 (AADP84_05910) - 1201408..1201977 (+) 570 WP_000725169.1 nicotinate-nucleotide adenylyltransferase -
  AADP84_RS05915 (AADP84_05915) yqeK 1201967..1202551 (+) 585 WP_031787283.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  AADP84_RS05920 (AADP84_05920) rsfS 1202552..1202905 (+) 354 WP_001088023.1 ribosome silencing factor -
  AADP84_RS05925 (AADP84_05925) - 1202908..1203624 (+) 717 WP_031787282.1 class I SAM-dependent methyltransferase -
  AADP84_RS05930 (AADP84_05930) comEA 1203664..1204365 (+) 702 WP_072324129.1 ComEA family DNA-binding protein Machinery gene
  AADP84_RS05935 (AADP84_05935) - 1204457..1204918 (+) 462 WP_000439693.1 ComE operon protein 2 -
  AADP84_RS05940 (AADP84_05940) comEC 1204923..1207124 (+) 2202 WP_031787280.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AADP84_RS05945 (AADP84_05945) holA 1207181..1208155 (+) 975 WP_001282558.1 DNA polymerase III subunit delta -
  AADP84_RS05950 (AADP84_05950) rpsT 1208205..1208456 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26367.06 Da        Isoelectric Point: 9.7027

>NTDB_id=975750 AADP84_RS05930 WP_072324129.1 1203664..1204365(+) (comEA) [Staphylococcus argenteus strain Dubai-25]
MVLLYQFLLRYKDFFNQWKLYIISAVVLIMLLIGFIFWRQDEHTARDFENKDTALKQNTSENSSLSKLEDVQVKDGDNSK
NKGPVYIDVKGAVKHPNVYKMTSKDRVIDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHTKN
GNTKNGNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 702 bp        

>NTDB_id=975750 AADP84_RS05930 WP_072324129.1 1203664..1204365(+) (comEA) [Staphylococcus argenteus strain Dubai-25]
GTGGTTTTGTTGTATCAATTTTTATTACGCTATAAAGATTTTTTCAATCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGTTATTAATAGGTTTTATATTCTGGAGACAAGATGAACATACTGCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAACACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATATCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTACAAAATGACATCTAAGGATAGAGT
AATTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTTATACCTCATAAAGGACAAAAGAACGTTGAACCACAAATTGGAGTAAATAGTGTGCACACAAAAAAT
GGGAACACAAAAAATGGAAACACAAATAATACTAAAGTAAATCTAAATACGGCATCTGTATCTGAATTGATGTCTGTTCC
TGGAGTAGGTCAAGCTAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGA
AAAAAGTAAAAGGTTTTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(169-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

91.81

99.571

0.914
  comEA Staphylococcus aureus N315

91.81

99.571

0.914

Multiple sequence alignment