Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AAC899_RS14970 Genome accession   NZ_CP151168
Coordinates   3176270..3177688 (+) Length   472 a.a.
NCBI ID   WP_343316360.1    Uniprot ID   -
Organism   Acinetobacter soli strain HY24     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3171270..3182688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC899_RS14950 (AAC899_14950) thrC 3171538..3172677 (+) 1140 WP_004944129.1 threonine synthase -
  AAC899_RS14955 (AAC899_14955) pbpG 3172744..3173802 (-) 1059 WP_317657721.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  AAC899_RS14960 (AAC899_14960) - 3174016..3174651 (+) 636 WP_004932261.1 response regulator -
  AAC899_RS14965 (AAC899_14965) pilS 3174674..3176242 (+) 1569 WP_111812612.1 ATP-binding protein Regulator
  AAC899_RS14970 (AAC899_14970) pilR 3176270..3177688 (+) 1419 WP_343316360.1 sigma-54 dependent transcriptional regulator Regulator
  AAC899_RS14975 (AAC899_14975) - 3177690..3178865 (-) 1176 WP_025096177.1 S41 family peptidase -
  AAC899_RS14980 (AAC899_14980) gpmI 3178877..3180424 (-) 1548 WP_317657720.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  AAC899_RS14985 (AAC899_14985) lptG 3180547..3181617 (-) 1071 WP_076033374.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 53202.11 Da        Isoelectric Point: 6.2312

>NTDB_id=975597 AAC899_RS14970 WP_343316360.1 3176270..3177688(+) (pilR) [Acinetobacter soli strain HY24]
MTILQPRVLLIDDEEDLCSLMQISLSRMGIHTDCAYNVEQAKQLLATHEYNACLTDLNLPDGHGLDLIDHVNEYFPYIPI
AVITAYGNMEIAISALKAGAFDFVSKPINPQHLKQLIQTALNSSQMHPDNDRETLEHQLLLGQSEPIEALRIALRKISRS
QAPVFITGESGTGKEVVANLVHRLSNRNEGPFIAINCGAIPAELMESELFGHKKGSFTGATQDKQGLIQAAQGGSLFLDE
VAELPLSMQVKLLRAIQEKKIRPLGSEHEIDVDFRVISASHQQLEQLVQQGKFRQDLFFRIHVMDITLPPLRERGDDILI
LARHFVGHVCRDWIIPIKQLTAAAEEFLLHYPFPGNVRELRNMIERAITLSETAFIDVQHLNGSSLRDYTSAVTEATDYL
KIPRVIAQQPETKTKLPHEGLEQYLEKIEKEILLNALNCSHWNRTLAAKKLGMSFRSLRYRLKKFGLDTEES

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=975597 AAC899_RS14970 WP_343316360.1 3176270..3177688(+) (pilR) [Acinetobacter soli strain HY24]
ATGACCATTCTTCAACCACGTGTATTACTGATCGATGACGAAGAAGATCTTTGTTCATTGATGCAAATTAGCCTGTCGCG
CATGGGCATCCATACAGATTGTGCCTACAATGTAGAGCAGGCCAAACAATTGCTTGCGACACACGAATACAATGCCTGTC
TGACCGACCTCAATCTACCCGATGGTCATGGACTAGATTTGATTGATCATGTGAATGAATATTTTCCGTATATTCCGATT
GCTGTGATCACAGCCTATGGCAACATGGAAATTGCCATTTCAGCGCTTAAAGCGGGTGCTTTTGATTTTGTCAGTAAACC
GATCAATCCGCAGCATCTGAAACAACTGATACAGACCGCACTTAACAGTAGCCAGATGCATCCCGACAATGATAGGGAAA
CTCTTGAACACCAGCTCTTGCTTGGGCAATCTGAACCCATTGAAGCACTTCGGATTGCGCTACGAAAAATCTCGCGCTCA
CAGGCGCCGGTCTTTATTACCGGTGAATCCGGAACAGGTAAAGAAGTGGTGGCCAATCTCGTTCATCGCTTAAGTAATCG
TAATGAAGGCCCTTTTATTGCGATTAACTGTGGTGCAATTCCAGCCGAACTGATGGAAAGTGAATTATTTGGTCATAAAA
AAGGCAGTTTTACTGGTGCCACACAAGACAAGCAAGGGTTGATACAAGCGGCACAAGGCGGCAGTCTGTTTCTAGATGAA
GTGGCAGAATTACCGCTGAGCATGCAAGTCAAATTGCTACGCGCTATTCAGGAAAAGAAAATACGTCCTCTCGGATCTGA
GCACGAAATCGATGTGGATTTTCGAGTGATCAGTGCCAGTCATCAACAGCTTGAACAACTGGTTCAACAAGGCAAATTTC
GCCAAGATTTGTTTTTTCGTATTCATGTCATGGACATTACCCTGCCACCGCTACGAGAGCGTGGAGACGATATTTTGATT
TTAGCACGACATTTTGTTGGGCATGTCTGTCGTGACTGGATCATCCCGATCAAACAACTGACCGCAGCAGCTGAAGAATT
TTTACTGCATTATCCGTTTCCGGGGAATGTACGTGAATTACGTAACATGATCGAACGTGCCATAACTTTAAGTGAAACTG
CATTTATCGACGTGCAACACTTAAATGGCTCCTCCCTACGCGACTATACTTCCGCAGTAACTGAAGCAACCGATTATCTT
AAAATTCCACGTGTGATCGCACAGCAGCCTGAAACTAAAACCAAGCTTCCTCACGAAGGGCTCGAGCAATATCTTGAAAA
AATTGAAAAAGAGATATTATTAAATGCTTTGAATTGTAGTCACTGGAATCGAACCTTGGCCGCAAAAAAACTCGGCATGA
GCTTTCGCTCACTTCGCTATCGCTTGAAGAAATTTGGTCTTGATACTGAAGAAAGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(425-465)

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(141-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

72.532

98.729

0.716
  pilR Pseudomonas aeruginosa PAK

49.567

97.881

0.485

Multiple sequence alignment