Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AABL52_RS00090 Genome accession   NZ_CP151108
Coordinates   15192..15749 (+) Length   185 a.a.
NCBI ID   WP_149238154.1    Uniprot ID   -
Organism   Bacillus paramobilis strain IMGN7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 10192..20749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABL52_RS00060 (AABL52_00060) spo0J 10640..11491 (+) 852 WP_340422751.1 stage 0 sporulation protein Spo0J -
  AABL52_RS00065 (AABL52_00065) yyaC 11512..12108 (-) 597 WP_098257944.1 spore protease YyaC -
  AABL52_RS00070 (AABL52_00070) - 12368..13249 (+) 882 WP_000365106.1 mechanosensitive ion channel family protein -
  AABL52_RS00075 (AABL52_00075) - 13270..13467 (+) 198 WP_000436051.1 DUF951 domain-containing protein -
  AABL52_RS00080 (AABL52_00080) ychF 13582..14682 (+) 1101 WP_000524656.1 redox-regulated ATPase YchF -
  AABL52_RS00085 (AABL52_00085) rpsF 14875..15165 (+) 291 WP_001233781.1 30S ribosomal protein S6 -
  AABL52_RS00090 (AABL52_00090) ssbA 15192..15749 (+) 558 WP_149238154.1 single-stranded DNA-binding protein Machinery gene
  AABL52_RS00095 (AABL52_00095) rpsR 15794..16027 (+) 234 WP_000918874.1 30S ribosomal protein S18 -
  AABL52_RS00100 (AABL52_00100) - 16109..17044 (+) 936 WP_341518714.1 YybS family protein -
  AABL52_RS00105 (AABL52_00105) - 17123..19096 (+) 1974 WP_001113902.1 DHH family phosphoesterase -
  AABL52_RS00110 (AABL52_00110) rplI 19093..19539 (+) 447 WP_000864239.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20006.72 Da        Isoelectric Point: 4.9222

>NTDB_id=974859 AABL52_RS00090 WP_149238154.1 15192..15749(+) (ssbA) [Bacillus paramobilis strain IMGN7]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNQGNQGNQGNQGNS
GFTKNDDPFSNVGQPIDISDDDLPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=974859 AABL52_RS00090 WP_149238154.1 15192..15749(+) (ssbA) [Bacillus paramobilis strain IMGN7]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGATGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGCAACCAAGGTAACCAAGGTAACCAAGGTAACCAAGGTAACCAAGGTAACCAAGGGAACTCT
GGATTTACGAAGAATGACGATCCATTTTCAAATGTAGGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.149

100

0.703
  ssb Latilactobacillus sakei subsp. sakei 23K

56.684

100

0.573
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

57.297

0.368

Multiple sequence alignment