Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   ACMX77_RS16185 Genome accession   NZ_CP180438
Coordinates   3062143..3063147 (-) Length   334 a.a.
NCBI ID   WP_003229285.1    Uniprot ID   P25144
Organism   Bacillus subtilis strain W-2     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3057143..3068147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMX77_RS16160 (ACMX77_16160) acuA 3058070..3058702 (+) 633 WP_003229296.1 acetoin utilization protein acetyltransferase AcuA -
  ACMX77_RS16165 (ACMX77_16165) acuB 3058729..3059373 (+) 645 WP_192852038.1 acetoin utilization AcuB family protein -
  ACMX77_RS16170 (ACMX77_16170) acuC 3059370..3060533 (+) 1164 WP_047183034.1 acetoin utilization protein AcuC -
  ACMX77_RS16175 (ACMX77_16175) motS 3060544..3061272 (-) 729 WP_415749588.1 flagellar motor protein MotS -
  ACMX77_RS16180 (ACMX77_16180) motP 3061262..3062080 (-) 819 WP_014477672.1 flagellar motor protein MotP -
  ACMX77_RS16185 (ACMX77_16185) ccpA 3062143..3063147 (-) 1005 WP_003229285.1 catabolite control protein A Regulator
  ACMX77_RS16190 (ACMX77_16190) aroX 3063423..3064499 (-) 1077 WP_003223454.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  ACMX77_RS16195 (ACMX77_16195) ytxJ 3064736..3065062 (-) 327 WP_015251445.1 bacillithiol system redox-active protein YtxJ -
  ACMX77_RS16200 (ACMX77_16200) ytxH 3065086..3065541 (-) 456 WP_004398549.1 YtxH domain-containing protein -
  ACMX77_RS16205 (ACMX77_16205) ytxG 3065572..3065994 (-) 423 WP_003229276.1 DUF948 domain-containing protein -
  ACMX77_RS16210 (ACMX77_16210) murC 3066156..3067454 (-) 1299 WP_047183035.1 UDP-N-acetylmuramate--L-alanine ligase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36940.34 Da        Isoelectric Point: 5.0249

>NTDB_id=974756 ACMX77_RS16185 WP_003229285.1 3062143..3063147(-) (ccpA) [Bacillus subtilis strain W-2]
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAI
DYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKK
PTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIV
ELPHRIELRKSTKS

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=974756 ACMX77_RS16185 WP_003229285.1 3062143..3063147(-) (ccpA) [Bacillus subtilis strain W-2]
ATGAGCAATATTACGATCTACGATGTAGCGAGAGAAGCTAATGTAAGCATGGCAACCGTTTCCCGTGTCGTGAACGGCAA
CCCGAATGTAAAACCGACAACGCGGAAAAAAGTCTTGGAAGCCATTGAACGTCTCGGTTACCGTCCAAACGCGGTGGCAA
GAGGGCTGGCAAGTAAAAAAACAACAACTGTAGGTGTCATCATTCCCGATATCTCAAGCATTTTCTATTCAGAGCTTGCA
CGCGGAATTGAAGATATCGCGACAATGTATAAATACAATATTATTTTGAGCAACTCTGACCAAAACATGGAGAAAGAGCT
GCACTTGTTAAACACAATGCTCGGCAAACAAGTGGACGGCATCGTGTTTATGGGCGGAAACATTACGGACGAGCATGTGG
CGGAATTTAAGCGTTCCCCAGTGCCGATCGTACTTGCTGCTTCTGTAGAAGAGCAGGAGGAAACACCGTCAGTCGCTATC
GATTACGAACAGGCGATTTATGATGCCGTGAAGCTTTTGGTTGATAAAGGACATACAGACATCGCGTTCGTTTCCGGACC
AATGGCCGAACCGATCAACCGTTCGAAAAAACTCCAAGGCTACAAACGTGCGCTTGAAGAAGCGAACCTTCCGTTTAATG
AACAATTTGTAGCTGAAGGGGATTACACATATGATTCCGGACTCGAAGCACTGCAGCATCTGATGAGCCTGGATAAAAAA
CCGACAGCCATTCTTTCTGCAACTGATGAAATGGCACTGGGCATTATCCATGCTGCTCAGGATCAGGGCTTATCCATTCC
GGAGGATCTCGACATTATCGGTTTTGATAATACAAGATTAAGCCTTATGGTTCGCCCGCAGCTTTCAACAGTTGTTCAGC
CGACATATGATATTGGCGCCGTTGCGATGAGACTGCTGACGAAGCTCATGAATAAAGAGCCGGTTGAAGAGCATATCGTC
GAACTGCCGCACCGTATAGAGCTAAGAAAGTCAACCAAGTCATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(5-50)

Periplasmic binding protein-like domain (Peripla_BP_3)

(171-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1ZVV
  PDB 2FEP
  PDB 3OQM
  PDB 3OQN
  PDB 3OQO

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

54.545

98.802

0.539
  ccpA Streptococcus gordonii str. Challis substr. CH1

53.636

98.802

0.53
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

50.602

99.401

0.503