Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   QDT75_RS01500 Genome accession   NZ_CP151078
Coordinates   320103..320843 (+) Length   246 a.a.
NCBI ID   WP_279722717.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain PUMA0052     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 315103..325843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDT75_RS01485 (QDT75_01485) ponA 315690..318245 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  QDT75_RS01490 (QDT75_01490) pilM 318407..319465 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  QDT75_RS01495 (QDT75_01495) pilN 319465..320106 (+) 642 WP_000201226.1 PilN domain-containing protein Machinery gene
  QDT75_RS01500 (QDT75_01500) pilO 320103..320843 (+) 741 WP_279722717.1 type 4a pilus biogenesis protein PilO Machinery gene
  QDT75_RS01505 (QDT75_01505) pilP 320854..321381 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  QDT75_RS01510 (QDT75_01510) pilQ 321444..323570 (+) 2127 WP_279722718.1 type IV pilus secretin PilQ Machinery gene
  QDT75_RS01515 (QDT75_01515) aroK 323582..324151 (+) 570 WP_000643712.1 shikimate kinase AroK -
  QDT75_RS01520 (QDT75_01520) aroB 324180..325262 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27859.67 Da        Isoelectric Point: 4.7234

>NTDB_id=974716 QDT75_RS01500 WP_279722717.1 320103..320843(+) (pilO) [Acinetobacter baumannii strain PUMA0052]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWVFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEAIGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQMGNPPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=974716 QDT75_RS01500 WP_279722717.1 320103..320843(+) (pilO) [Acinetobacter baumannii strain PUMA0052]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTATGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGGTTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTGCCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGCTTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGATCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATATCGATACGTAGGGGCAACAGATACATCGGAGCAGATGGGCAACCCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

97.967

100

0.98
  comO Acinetobacter baylyi ADP1

68.313

98.78

0.675

Multiple sequence alignment