Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   QDT75_RS01495 Genome accession   NZ_CP151078
Coordinates   319465..320106 (+) Length   213 a.a.
NCBI ID   WP_000201226.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain PUMA0052     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 314465..325106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDT75_RS01475 (QDT75_01475) - 314513..314845 (+) 333 WP_000169601.1 hypothetical protein -
  QDT75_RS01480 (QDT75_01480) - 314848..315672 (+) 825 WP_272228436.1 putative RNA methyltransferase -
  QDT75_RS01485 (QDT75_01485) ponA 315690..318245 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  QDT75_RS01490 (QDT75_01490) pilM 318407..319465 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  QDT75_RS01495 (QDT75_01495) pilN 319465..320106 (+) 642 WP_000201226.1 PilN domain-containing protein Machinery gene
  QDT75_RS01500 (QDT75_01500) pilO 320103..320843 (+) 741 WP_279722717.1 type 4a pilus biogenesis protein PilO Machinery gene
  QDT75_RS01505 (QDT75_01505) pilP 320854..321381 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  QDT75_RS01510 (QDT75_01510) pilQ 321444..323570 (+) 2127 WP_279722718.1 type IV pilus secretin PilQ Machinery gene
  QDT75_RS01515 (QDT75_01515) aroK 323582..324151 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23989.33 Da        Isoelectric Point: 5.3968

>NTDB_id=974715 QDT75_RS01495 WP_000201226.1 319465..320106(+) (pilN) [Acinetobacter baumannii strain PUMA0052]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=974715 QDT75_RS01495 WP_000201226.1 319465..320106(+) (pilN) [Acinetobacter baumannii strain PUMA0052]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGTGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

72.596

97.653

0.709

Multiple sequence alignment