Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AABC73_RS20865 Genome accession   NZ_CP151076
Coordinates   4442708..4443382 (-) Length   224 a.a.
NCBI ID   WP_341524296.1    Uniprot ID   -
Organism   Pseudomonas sp. G.S.17     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4437708..4448382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABC73_RS20835 (AABC73_20845) - 4438259..4439248 (-) 990 WP_341520768.1 XdhC family protein -
  AABC73_RS20840 (AABC73_20850) murB 4439305..4440324 (-) 1020 WP_341520769.1 UDP-N-acetylmuramate dehydrogenase -
  AABC73_RS20845 (AABC73_20855) kdsB 4440321..4441085 (-) 765 WP_341520770.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AABC73_RS20850 (AABC73_20860) - 4441082..4441267 (-) 186 WP_003174668.1 Trm112 family protein -
  AABC73_RS20855 (AABC73_20865) lpxK 4441285..4442280 (-) 996 WP_341520771.1 tetraacyldisaccharide 4'-kinase -
  AABC73_RS20860 (AABC73_20870) - 4442280..4442711 (-) 432 WP_020290396.1 biopolymer transporter ExbD -
  AABC73_RS20865 (AABC73_20875) exbB 4442708..4443382 (-) 675 WP_341524296.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AABC73_RS20870 (AABC73_20880) comA 4443450..4445681 (-) 2232 WP_341520772.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AABC73_RS20875 (AABC73_20885) rluB 4446295..4447575 (-) 1281 WP_341520773.1 23S rRNA pseudouridine(2605) synthase RluB -
  AABC73_RS20880 (AABC73_20890) - 4447761..4447949 (-) 189 WP_341520774.1 DUF1289 domain-containing protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24326.54 Da        Isoelectric Point: 7.3260

>NTDB_id=974696 AABC73_RS20865 WP_341524296.1 4442708..4443382(-) (exbB) [Pseudomonas sp. G.S.17]
MWELVKSGGWMMLPIILSSIAAVGIIIERLWTLRASRITPPHLLGQVWRWIQDKKLDSEKLKELRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARIIHDLERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNATGNTANAAVLAGGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQEAIKLVEVVQGDRDVDVNDPSIQLKAQARGEGRKK

Nucleotide


Download         Length: 675 bp        

>NTDB_id=974696 AABC73_RS20865 WP_341524296.1 4442708..4443382(-) (exbB) [Pseudomonas sp. G.S.17]
GTGTGGGAACTGGTCAAATCAGGTGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCCGCGGTCGGCATCATCAT
CGAGCGTCTCTGGACCTTGCGTGCCAGCCGCATCACGCCGCCGCATTTGCTGGGGCAGGTCTGGCGCTGGATCCAGGACA
AGAAACTCGACAGCGAAAAGCTCAAGGAGCTGCGCGCCGATTCGCCGCTGGGTGAAATCCTCGCCGCAGGCCTGGCCAAC
TCCAGGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAAGCCGCCGCACGGATCATTCATGATCTGGAGCGCTATTT
GAGCGCCCTGGGTTCGATTGCTGCCATGGCGCCGTTGCTGGGTTTGCTGGGCACCGTGCTGGGCATGATCGATATCTTTG
GCTCGTTCAACGCCACCGGTAACACGGCCAATGCCGCTGTGTTGGCAGGCGGTATCTCCAAGGCGCTGATCTGTACCGCA
TCTGGGCTGATCGTGGCCATTCCGGCGATTTTCTTTCATCGTTTCCTGCAAAGCCGGGTCGATGAACTGGTGGTCGGGAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGACGTCGATGTCAACGATCCAAGTATCCAGCTCA
AGGCGCAGGCCCGGGGTGAGGGTCGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80.288

92.857

0.746

Multiple sequence alignment