Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   AABC73_RS20870 Genome accession   NZ_CP151076
Coordinates   4443450..4445681 (-) Length   743 a.a.
NCBI ID   WP_341520772.1    Uniprot ID   -
Organism   Pseudomonas sp. G.S.17     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4438450..4450681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABC73_RS20840 (AABC73_20850) murB 4439305..4440324 (-) 1020 WP_341520769.1 UDP-N-acetylmuramate dehydrogenase -
  AABC73_RS20845 (AABC73_20855) kdsB 4440321..4441085 (-) 765 WP_341520770.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AABC73_RS20850 (AABC73_20860) - 4441082..4441267 (-) 186 WP_003174668.1 Trm112 family protein -
  AABC73_RS20855 (AABC73_20865) lpxK 4441285..4442280 (-) 996 WP_341520771.1 tetraacyldisaccharide 4'-kinase -
  AABC73_RS20860 (AABC73_20870) - 4442280..4442711 (-) 432 WP_020290396.1 biopolymer transporter ExbD -
  AABC73_RS20865 (AABC73_20875) exbB 4442708..4443382 (-) 675 WP_341524296.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AABC73_RS20870 (AABC73_20880) comA 4443450..4445681 (-) 2232 WP_341520772.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AABC73_RS20875 (AABC73_20885) rluB 4446295..4447575 (-) 1281 WP_341520773.1 23S rRNA pseudouridine(2605) synthase RluB -
  AABC73_RS20880 (AABC73_20890) - 4447761..4447949 (-) 189 WP_341520774.1 DUF1289 domain-containing protein -
  AABC73_RS20885 (AABC73_20895) scpB 4448011..4448799 (-) 789 WP_065833372.1 SMC-Scp complex subunit ScpB -
  AABC73_RS20890 (AABC73_20900) - 4448810..4449568 (-) 759 WP_170826322.1 ScpA family protein -
  AABC73_RS20895 (AABC73_20905) - 4449628..4450257 (-) 630 WP_020290403.1 L-threonylcarbamoyladenylate synthase -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 81327.50 Da        Isoelectric Point: 9.9014

>NTDB_id=974697 AABC73_RS20870 WP_341520772.1 4443450..4445681(-) (comA) [Pseudomonas sp. G.S.17]
MRTGMFALASGMLLLRFLPQLPPTWLLLLMPVVALMLLPFRTYPLAFFLFGLTWACASAQSALNDRLPSRLDGQTLWLQG
KVVGLPSLAEGVVRFELEDAKSRRARLPEHLRVSWYGGPAVRSGERWRLAVKLKQPSGLVNPHAFDYEAWLLAQRIGATG
TVVDGQLLSAARYGWRDALRQRLLAVDAQGREGGLAALVLGDGSGLSTADWQTLQNTGTVHLLVISGQHIGLLAGVIYAL
IAGLARWGLWPRALPWLPWACGLAFTAALGYGLLAGFEVPVRRACVMVGMVLLWRLRFRHLGVLWPLLLSLNAVLIFEPL
ASLQPGFWLSFLAVGILLLIFSGRLGAWSWIRSWTRAQWLIALGLLPVLLALNLPVSLSGPLANLIAVPWVSFVALPPAL
LGTLLLPVPVIGESLLWLAGGALNGLFWFLGWVAGVVPVWIPGAMPVWVWALSLLGALLLLLPSGVPLRPLGWPLLLLCV
FPPLKSVPHGQVQVLQMDVGQGLAILLRTRQHTLLFDAGPRFGEFDIGERIVLPVMRKVGVRKLDLMLLSHADADHAGGA
LAVQQGMPVARVLGGELERLAPQLNAQLCQIDESWEWDGVTFSTWRWEQAKEGNQASCVLMVDANGERLLLTGDIDADAE
QAALRSDFDVRANWLQAPHHGSRTSSSKPFLRGVDPQGVLISRGRNNGFGHPHPLVMSRYHWFGIRTYDSAELGAISLQL
GTFGQPQVERGLQRFWRDSSDGN

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=974697 AABC73_RS20870 WP_341520772.1 4443450..4445681(-) (comA) [Pseudomonas sp. G.S.17]
ATGCGCACAGGGATGTTCGCGCTGGCGTCAGGGATGCTGCTGTTACGTTTTCTGCCGCAACTGCCGCCGACCTGGCTGTT
GCTGTTGATGCCGGTCGTGGCCTTGATGCTGCTGCCGTTTCGCACTTATCCACTGGCGTTTTTTCTGTTCGGCCTGACCT
GGGCTTGCGCGTCGGCGCAATCGGCGCTGAATGATCGGCTGCCGTCACGGCTGGATGGCCAGACGCTCTGGCTGCAAGGC
AAGGTGGTCGGCTTGCCCAGTCTTGCCGAAGGCGTGGTGCGTTTCGAGCTGGAAGACGCCAAGTCCCGTCGCGCTCGATT
GCCTGAACACCTCCGTGTTTCCTGGTATGGCGGCCCGGCCGTGCGCAGTGGCGAGCGCTGGCGTCTGGCGGTCAAGCTCA
AGCAGCCCAGCGGGTTGGTCAATCCCCACGCATTTGATTACGAGGCCTGGTTGCTGGCACAGCGGATCGGGGCAACCGGC
ACCGTCGTCGATGGACAACTGCTGTCCGCCGCCAGGTATGGCTGGCGTGACGCGCTGCGGCAGCGATTGCTGGCGGTTGA
CGCGCAAGGGCGCGAAGGCGGGCTGGCAGCGCTGGTGCTCGGCGATGGTTCGGGCTTGAGCACGGCGGACTGGCAAACCC
TGCAGAACACCGGGACTGTGCATCTATTGGTGATTTCCGGCCAGCACATTGGCTTGTTGGCGGGAGTGATCTACGCGCTG
ATCGCCGGGCTGGCGCGCTGGGGTTTATGGCCTCGGGCCTTGCCCTGGTTGCCGTGGGCCTGTGGCCTGGCGTTTACCGC
TGCACTTGGCTATGGCTTGCTCGCCGGGTTCGAAGTGCCGGTGCGTCGGGCCTGCGTCATGGTCGGCATGGTGCTGCTCT
GGCGTCTGCGCTTTCGGCATCTGGGCGTGCTCTGGCCGTTGCTGTTGTCGCTCAATGCGGTCCTGATCTTCGAGCCACTG
GCCAGTCTTCAGCCGGGATTCTGGCTGTCGTTCCTTGCAGTGGGAATTCTGCTGTTGATTTTCAGTGGGCGATTGGGCGC
CTGGAGCTGGATACGCAGCTGGACACGGGCGCAGTGGCTGATTGCCCTGGGTTTGTTGCCGGTCCTGCTGGCGCTGAATC
TGCCCGTCAGTCTCAGCGGACCTTTGGCCAACTTGATCGCCGTGCCCTGGGTCAGCTTCGTTGCGTTGCCGCCCGCGCTG
CTGGGCACGTTGTTGCTGCCGGTTCCGGTCATCGGCGAAAGCCTGTTGTGGCTGGCCGGTGGCGCGCTGAATGGGCTGTT
CTGGTTTCTCGGTTGGGTGGCGGGCGTGGTGCCAGTCTGGATCCCCGGCGCGATGCCGGTGTGGGTCTGGGCGTTGAGCC
TGTTGGGCGCCTTGCTGTTATTGCTGCCCAGCGGCGTGCCGTTACGGCCGCTGGGCTGGCCACTGCTGCTGTTGTGCGTG
TTCCCGCCTTTGAAATCCGTGCCTCACGGGCAAGTACAGGTGTTGCAAATGGATGTCGGCCAAGGCCTGGCGATCCTGCT
GCGCACGCGGCAACACACCCTGTTGTTCGATGCGGGGCCGCGCTTTGGCGAGTTCGATATCGGCGAGCGGATCGTGCTGC
CCGTCATGCGTAAAGTCGGGGTGCGCAAGCTGGACCTGATGCTGCTCAGCCATGCCGACGCCGATCATGCCGGCGGAGCC
TTGGCAGTCCAGCAAGGCATGCCGGTTGCCCGGGTTCTGGGTGGCGAGCTGGAACGGCTCGCGCCGCAACTCAACGCGCA
ACTGTGTCAGATCGACGAATCCTGGGAATGGGACGGCGTAACGTTCTCGACCTGGCGCTGGGAGCAGGCGAAAGAAGGCA
ACCAGGCGTCTTGCGTGCTGATGGTCGACGCCAATGGCGAGCGGCTGTTGCTGACCGGTGATATCGACGCCGATGCCGAA
CAAGCAGCGCTGCGCAGCGACTTCGACGTGCGCGCTAATTGGCTGCAAGCGCCGCATCACGGCAGTCGCACCTCATCGTC
CAAGCCATTTCTGCGAGGTGTCGACCCGCAGGGCGTCCTGATCTCCCGTGGTCGCAACAATGGCTTCGGTCACCCGCATC
CGTTGGTCATGTCGCGCTATCACTGGTTTGGCATTCGCACCTACGACAGCGCCGAGCTGGGTGCGATCAGCCTGCAACTG
GGCACCTTCGGTCAACCCCAGGTCGAACGGGGCCTCCAGCGGTTCTGGCGTGACTCATCCGACGGAAATTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-166)

Competence protein (Competence)

(198-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-664)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.04

96.501

0.608
  comA Ralstonia pseudosolanacearum GMI1000

33.051

100

0.367

Multiple sequence alignment