Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   ACK8DE_RS17695 Genome accession   NZ_CP179872
Coordinates   3656547..3657029 (-) Length   160 a.a.
NCBI ID   WP_001046413.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain MRSN15116     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3651547..3662029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK8DE_RS17660 (ACK8DE_17660) - 3651654..3652688 (+) 1035 WP_046693070.1 lipase secretion chaperone -
  ACK8DE_RS17665 (ACK8DE_17665) - 3652803..3653744 (+) 942 WP_098713316.1 lipase family alpha/beta hydrolase -
  ACK8DE_RS17670 (ACK8DE_17670) rplS 3653797..3654165 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  ACK8DE_RS17675 (ACK8DE_17675) trmD 3654373..3655113 (-) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ACK8DE_RS17680 (ACK8DE_17680) rimM 3655159..3655707 (-) 549 WP_005130741.1 ribosome maturation factor RimM -
  ACK8DE_RS17685 (ACK8DE_17685) rpsP 3655727..3655978 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  ACK8DE_RS17690 (ACK8DE_17690) pilE 3656125..3656550 (-) 426 WP_005130737.1 type IV pilin protein Machinery gene
  ACK8DE_RS17695 (ACK8DE_17695) pilY2 3656547..3657029 (-) 483 WP_001046413.1 type IV pilin protein Machinery gene
  ACK8DE_RS17700 (ACK8DE_17700) pilY1 3657042..3660896 (-) 3855 WP_023896142.1 PilC/PilY family type IV pilus protein Machinery gene
  ACK8DE_RS17705 (ACK8DE_17705) pilX 3660908..3661726 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17602.87 Da        Isoelectric Point: 8.8351

>NTDB_id=974229 ACK8DE_RS17695 WP_001046413.1 3656547..3657029(-) (pilY2) [Acinetobacter baumannii strain MRSN15116]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTRGNLLTNSAANGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=974229 ACK8DE_RS17695 WP_001046413.1 3656547..3657029(-) (pilY2) [Acinetobacter baumannii strain MRSN15116]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACCAGAGGTAATTTATTAACAAATTCTGCTGCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCTGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-133)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.125

100

0.931
  comE Acinetobacter baylyi ADP1

39.535

100

0.425