Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   AABD46_RS01990 Genome accession   NZ_CP150947
Coordinates   421911..422555 (-) Length   214 a.a.
NCBI ID   WP_140103016.1    Uniprot ID   A0AAW8Q7X5
Organism   Vibrio parahaemolyticus strain vp-HL-202212     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 416911..427555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD46_RS01980 (AABD46_01980) uvrA 417821..420643 (-) 2823 WP_025522377.1 excinuclease ABC subunit UvrA -
  AABD46_RS01985 (AABD46_01985) galU 420781..421653 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  AABD46_RS01990 (AABD46_01990) qstR 421911..422555 (-) 645 WP_140103016.1 LuxR C-terminal-related transcriptional regulator Regulator
  AABD46_RS01995 (AABD46_01995) ssb 422834..423364 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  AABD46_RS02000 (AABD46_02000) csrD 423605..425614 (+) 2010 WP_011106082.1 RNase E specificity factor CsrD -
  AABD46_RS02005 (AABD46_02005) - 425626..427071 (+) 1446 WP_005481017.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24400.23 Da        Isoelectric Point: 8.7760

>NTDB_id=974170 AABD46_RS01990 WP_140103016.1 421911..422555(-) (qstR) [Vibrio parahaemolyticus strain vp-HL-202212]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPIISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=974170 AABD46_RS01990 WP_140103016.1 421911..422555(-) (qstR) [Vibrio parahaemolyticus strain vp-HL-202212]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTATAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTACCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAACGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCTGGAGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATCGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

99.533

100

0.995
  qstR Vibrio campbellii strain DS40M4

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

51.628

100

0.519

Multiple sequence alignment