Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AABM52_RS26460 Genome accession   NZ_CP150919
Coordinates   5893851..5895188 (+) Length   445 a.a.
NCBI ID   WP_347909142.1    Uniprot ID   -
Organism   Pseudomonas grandcourensis strain DGS24     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5888851..5900188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABM52_RS26435 pgeF 5890288..5891013 (-) 726 WP_347909134.1 peptidoglycan editing factor PgeF -
  AABM52_RS26440 rluD 5891010..5891972 (-) 963 WP_008052092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AABM52_RS26445 - 5892124..5893146 (+) 1023 WP_347909136.1 outer membrane protein assembly factor BamD -
  AABM52_RS26450 - 5893272..5893505 (+) 234 WP_347909138.1 PP0621 family protein -
  AABM52_RS26455 - 5893612..5893854 (+) 243 WP_347909140.1 hypothetical protein -
  AABM52_RS26460 pilR 5893851..5895188 (+) 1338 WP_347909142.1 sigma-54 dependent transcriptional regulator Regulator
  AABM52_RS26465 thiO 5895193..5896293 (-) 1101 WP_347909144.1 glycine oxidase ThiO -
  AABM52_RS26470 - 5896350..5896751 (-) 402 WP_150813481.1 type IV pilin protein -
  AABM52_RS26475 - 5896766..5897179 (-) 414 WP_347909146.1 hypothetical protein -
  AABM52_RS26480 - 5897166..5897645 (-) 480 WP_347909148.1 PilX N-terminal domain-containing pilus assembly protein -
  AABM52_RS26485 - 5897656..5898363 (-) 708 WP_347909150.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  AABM52_RS26490 pilV 5898360..5898809 (-) 450 WP_347909151.1 type IV pilus modification protein PilV -
  AABM52_RS26495 - 5898806..5899279 (-) 474 WP_347909153.1 GspH/FimT family pseudopilin -
  AABM52_RS26500 - 5899410..5899949 (+) 540 WP_347909155.1 GspH/FimT family pseudopilin -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49958.48 Da        Isoelectric Point: 7.0884

>NTDB_id=973812 AABM52_RS26460 WP_347909142.1 5893851..5895188(+) (pilR) [Pseudomonas grandcourensis strain DGS24]
MNTRPRQKVLIVDDEPDIRELLEITLGRMKLETFNARNVGEAQSLLKRETFDLCLTDMQLPDGTGLELVQHIQLRHPQVQ
VAMITAYDSLENAINVLKAGAFDFLTKPVDLARLRELVTSALLVPARGVAIDRRLLGDSLPMRNLRKHITKLASSHATVY
ISGESGSGKELVARLIHDQSPRANQPFIAINCAAIPSELLESEFFGHRKGSFSGAIEDKPGLFQTAHGGTLLLDEVADLP
LAMQVKLLRAIQEKSVRCVGGQQEMAVDVRILCATHKNLDTEVAAGRFRHDLYYRLNVIELRVPPLRERRDDIEMLTSHI
LKRLAADTDQPAARLHPQALEALKSYRFPGNVRELENMLERAHTLCENKQIEAGDLRLAEGNCGAEGGVPDLTRIDNLEA
YLENVERQLLLQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=973812 AABM52_RS26460 WP_347909142.1 5893851..5895188(+) (pilR) [Pseudomonas grandcourensis strain DGS24]
TTGAACACGAGACCACGGCAAAAAGTCTTGATCGTCGATGACGAACCGGACATTCGCGAACTACTGGAAATCACCCTGGG
CAGGATGAAGCTGGAGACGTTCAACGCCCGCAATGTCGGCGAAGCGCAATCTCTGCTCAAACGCGAAACCTTCGATCTAT
GCCTGACCGACATGCAGTTGCCGGACGGTACCGGTCTGGAGCTGGTGCAGCACATCCAGCTACGCCACCCTCAGGTCCAG
GTGGCGATGATCACCGCCTATGACAGTCTCGAAAACGCGATCAATGTGCTCAAGGCCGGGGCGTTCGACTTCCTGACCAA
ACCGGTGGACCTTGCGCGCCTGCGCGAACTGGTCACCAGCGCCCTGCTGGTTCCTGCCCGAGGGGTCGCCATCGATCGAC
GCTTGTTGGGCGACTCACTGCCCATGCGCAACCTGCGCAAACACATCACCAAACTGGCCAGCAGCCATGCGACGGTATAT
ATCAGCGGAGAGTCCGGCAGCGGCAAGGAGTTGGTCGCGCGCCTGATCCATGATCAAAGCCCCCGTGCCAATCAGCCGTT
TATTGCGATCAACTGCGCGGCGATTCCCTCGGAACTGTTGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGTTTCAGCG
GCGCCATCGAAGACAAACCCGGCCTGTTCCAGACAGCCCACGGCGGCACCCTGCTCCTCGACGAAGTGGCCGACCTGCCG
CTGGCCATGCAAGTCAAACTGCTGCGAGCAATTCAGGAGAAATCCGTACGCTGCGTCGGCGGGCAGCAGGAGATGGCGGT
GGATGTGCGCATTCTCTGCGCCACCCACAAGAACCTTGACACTGAAGTCGCCGCCGGACGATTTCGTCATGATCTTTACT
ACCGTTTGAACGTGATCGAACTCCGGGTGCCGCCCTTGCGTGAGCGTCGTGACGATATCGAAATGCTGACCAGCCACATA
CTCAAGCGCCTGGCCGCCGATACAGATCAGCCTGCGGCAAGACTCCACCCCCAAGCCCTCGAGGCGCTGAAAAGCTATCG
CTTCCCGGGCAACGTGCGGGAACTGGAAAACATGCTCGAACGGGCGCACACCTTGTGTGAGAACAAACAGATCGAAGCCG
GCGACCTGCGCCTGGCTGAAGGCAATTGTGGGGCTGAGGGTGGCGTACCGGACCTGACCCGGATCGACAATCTGGAAGCA
TACCTGGAAAACGTCGAACGCCAACTGCTGCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACAGCGGCGGCCCAGCG
GTTGAACCTGTCATTCAGGTCGATGCGTTACCGGCTCAAGAAGTTGGGACTGGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

74.492

99.551

0.742
  pilR Acinetobacter baumannii strain A118

47.174

100

0.488

Multiple sequence alignment