Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   AABM54_RS08770 Genome accession   NZ_CP150918
Coordinates   1952517..1954754 (+) Length   745 a.a.
NCBI ID   WP_347904889.1    Uniprot ID   -
Organism   Pseudomonas purpurea strain DGS26     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1947517..1959754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABM54_RS08745 - 1948312..1948971 (+) 660 WP_347904884.1 transglutaminase family protein -
  AABM54_RS08750 - 1949280..1949903 (+) 624 WP_347904885.1 glutathione S-transferase -
  AABM54_RS08755 - 1950037..1950969 (+) 933 WP_347904886.1 ABC transporter ATP-binding protein -
  AABM54_RS08760 - 1950966..1951745 (+) 780 WP_347904887.1 ABC transporter permease -
  AABM54_RS08765 - 1951866..1952381 (-) 516 WP_347904888.1 DUF2062 domain-containing protein -
  AABM54_RS08770 comA 1952517..1954754 (+) 2238 WP_347904889.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AABM54_RS08775 exbB 1954853..1955488 (+) 636 WP_347904890.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AABM54_RS08780 - 1955485..1955913 (+) 429 WP_347904891.1 biopolymer transporter ExbD -
  AABM54_RS08785 lpxK 1955913..1956923 (+) 1011 WP_347904892.1 tetraacyldisaccharide 4'-kinase -
  AABM54_RS08790 - 1956950..1957135 (+) 186 WP_087265487.1 Trm112 family protein -
  AABM54_RS08795 kdsB 1957132..1957896 (+) 765 WP_347904893.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AABM54_RS08800 - 1957896..1958360 (+) 465 WP_347904894.1 low molecular weight protein-tyrosine-phosphatase -
  AABM54_RS08805 murB 1958357..1959376 (+) 1020 WP_347904895.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 81669.17 Da        Isoelectric Point: 10.0277

>NTDB_id=973775 AABM54_RS08770 WP_347904889.1 1952517..1954754(+) (comA) [Pseudomonas purpurea strain DGS26]
MRTGMLALAVGLLTLRFLPVLPPVGLLLLLPVLALMLLPFRSYPLAFYLLGLSWACISAQWALDDRLASGLDGQTRWVEG
RVVGLPDMDEGRVRFELADAQSRRARLPSLMRLSWRDGPPINSGERWRLAVKLNRPTGLLNPQAFDYDAWLLARRIGATG
TVKDGQLLRPAQGAWRDGVRQRLSSVDAQGRTGALAALVLGDGGGLSREDWRILQDTGTVHLLVISGQHVGMLAGLVYLL
IAGLARYGLWPTRWPWLPWACGLAFAAALGYGLLAGFEVPVRRACVMIGLVLLWRLRFRHLGAWWPLLLALDAVLLLEPL
ASLQPGFWLSFAAVAVLIFTFSGRLGAWRWWQTWTRAQWLIAIGLCPLLLALGLPISPGGPLANLLAVPWISLMVLPLAL
LGTLLLPLPYVGEGLLWVAGGSLDLLFSALGYMAGYVPAWVPPMLPLWVLGISALGAFLLLLPKGVPLRVLGWPMLLLIV
FAPLSRVPEGRAEIWQLDVGQGLAILVRTRHHAMLYDAGPRFGAFDLGERVVLPSLRKLGVKKLDLMLLSHADADHAGGA
GAVMRGLPVGHVLSGDPAALPAELLAQGCESGKRWEWDGVRFALWQWSDARESNQRSCVLQVEANGERLLLTGDIDAFAE
RELLDSPLAVTTHWLQAPHHGSRSSSSMPMLVALAPRVVLISRGHGNAFGHPHPQVMARYRRLGMAIYDSAEHGALRLQL
GDYLHRPEALREQARFWRERPGVDP

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=973775 AABM54_RS08770 WP_347904889.1 1952517..1954754(+) (comA) [Pseudomonas purpurea strain DGS26]
ATGCGCACAGGGATGTTGGCGCTCGCAGTGGGTCTGTTGACCCTGCGCTTTTTGCCGGTGCTGCCGCCGGTCGGCCTGTT
ACTGCTGTTGCCGGTGCTGGCCTTGATGCTGTTGCCGTTTCGCAGTTATCCCTTGGCGTTTTATCTGCTGGGCTTGAGTT
GGGCCTGCATCAGCGCCCAGTGGGCGCTGGATGATCGCCTGGCGTCTGGCCTGGACGGGCAAACCCGTTGGGTCGAAGGG
CGAGTGGTGGGGCTGCCGGACATGGATGAGGGCCGGGTGCGTTTTGAACTGGCCGATGCGCAGTCGCGGCGTGCGCGGTT
ACCGAGCCTGATGCGGTTGTCCTGGCGTGACGGGCCGCCAATCAATAGCGGTGAGCGTTGGCGGTTGGCAGTGAAGCTGA
ACCGCCCCACGGGGTTGCTCAATCCTCAGGCATTCGACTACGACGCCTGGCTGCTGGCGCGACGCATCGGGGCTACCGGG
ACGGTCAAGGACGGGCAGTTGTTGCGCCCGGCTCAAGGCGCCTGGCGCGATGGCGTCCGGCAGCGTTTGTCGAGCGTTGA
TGCGCAAGGCCGGACGGGCGCTCTGGCGGCATTGGTGCTGGGGGATGGCGGGGGCTTGAGTCGCGAAGACTGGCGCATTC
TGCAGGACACCGGAACCGTGCATTTGCTGGTGATTTCCGGGCAGCACGTCGGCATGCTGGCCGGGTTGGTGTATCTGCTG
ATTGCCGGGTTGGCCCGTTACGGGTTGTGGCCGACGCGCTGGCCCTGGCTGCCGTGGGCCTGCGGACTGGCCTTTGCGGC
GGCGCTGGGCTACGGCTTGCTGGCGGGGTTCGAAGTGCCGGTGCGCAGGGCCTGTGTGATGATCGGCCTGGTGCTGCTGT
GGCGTTTGCGCTTTCGCCATCTGGGCGCCTGGTGGCCGTTGTTGCTGGCCCTCGATGCGGTGTTGTTGCTTGAGCCGCTG
GCCAGTTTGCAACCCGGTTTCTGGTTGTCATTTGCGGCGGTGGCGGTGTTGATCTTCACCTTCAGCGGCCGTTTGGGTGC
GTGGCGCTGGTGGCAGACCTGGACCCGCGCTCAATGGCTGATCGCGATTGGCTTGTGTCCGCTGCTGTTGGCGCTCGGGT
TGCCCATCAGCCCTGGCGGGCCACTCGCCAATCTGCTGGCCGTGCCCTGGATCAGCCTGATGGTGTTGCCACTGGCGTTG
TTGGGGACATTACTGCTGCCGTTGCCCTATGTTGGTGAGGGACTGCTCTGGGTGGCTGGCGGTTCGCTCGATCTGTTGTT
CAGTGCCTTGGGGTACATGGCCGGATATGTTCCGGCCTGGGTCCCGCCGATGTTGCCGCTGTGGGTCCTGGGGATCAGTG
CGCTGGGAGCCTTTCTATTATTGTTGCCCAAGGGTGTGCCGTTGCGCGTGTTGGGTTGGCCGATGCTGTTGTTAATCGTG
TTTGCCCCGCTCAGTCGTGTACCCGAGGGGCGCGCGGAAATCTGGCAACTGGATGTCGGTCAGGGGTTGGCGATTCTCGT
CCGCACGCGCCACCACGCAATGCTCTACGACGCGGGACCGCGTTTTGGAGCCTTCGACCTGGGTGAGCGAGTGGTGCTGC
CGTCGCTGCGCAAGTTGGGGGTCAAGAAGCTCGATCTCATGCTGCTCAGCCATGCCGATGCCGATCACGCGGGAGGTGCT
GGTGCGGTCATGCGCGGATTGCCGGTGGGCCATGTGCTCAGTGGCGACCCGGCCGCGCTGCCTGCCGAACTGCTTGCCCA
GGGTTGTGAAAGCGGCAAGCGCTGGGAGTGGGACGGGGTGCGTTTTGCATTGTGGCAGTGGTCCGACGCCCGGGAGAGCA
ATCAGCGCTCCTGTGTCTTGCAGGTCGAGGCCAATGGAGAACGCTTGCTGCTGACCGGCGACATCGATGCTTTCGCTGAG
CGGGAATTGCTCGACAGTCCGTTGGCGGTGACCACGCACTGGTTGCAGGCACCGCACCACGGCAGTCGCAGTTCGTCATC
GATGCCCATGCTGGTGGCGCTCGCGCCCAGGGTCGTGCTGATTTCCCGTGGGCACGGCAACGCTTTCGGGCATCCCCATC
CGCAGGTCATGGCGCGTTATCGGCGGTTGGGGATGGCGATTTATGACAGCGCCGAACACGGTGCCTTGCGTCTGCAATTA
GGCGACTACCTGCACAGGCCCGAAGCCCTGCGCGAGCAGGCACGGTTCTGGCGTGAGCGCCCCGGCGTGGATCCATAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(22-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.523

96.779

0.615
  comA Ralstonia pseudosolanacearum GMI1000

33.492

100

0.379

Multiple sequence alignment