Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AABM54_RS08775 Genome accession   NZ_CP150918
Coordinates   1954853..1955488 (+) Length   211 a.a.
NCBI ID   WP_347904890.1    Uniprot ID   -
Organism   Pseudomonas purpurea strain DGS26     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1949853..1960488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABM54_RS08755 - 1950037..1950969 (+) 933 WP_347904886.1 ABC transporter ATP-binding protein -
  AABM54_RS08760 - 1950966..1951745 (+) 780 WP_347904887.1 ABC transporter permease -
  AABM54_RS08765 - 1951866..1952381 (-) 516 WP_347904888.1 DUF2062 domain-containing protein -
  AABM54_RS08770 comA 1952517..1954754 (+) 2238 WP_347904889.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AABM54_RS08775 exbB 1954853..1955488 (+) 636 WP_347904890.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AABM54_RS08780 - 1955485..1955913 (+) 429 WP_347904891.1 biopolymer transporter ExbD -
  AABM54_RS08785 lpxK 1955913..1956923 (+) 1011 WP_347904892.1 tetraacyldisaccharide 4'-kinase -
  AABM54_RS08790 - 1956950..1957135 (+) 186 WP_087265487.1 Trm112 family protein -
  AABM54_RS08795 kdsB 1957132..1957896 (+) 765 WP_347904893.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AABM54_RS08800 - 1957896..1958360 (+) 465 WP_347904894.1 low molecular weight protein-tyrosine-phosphatase -
  AABM54_RS08805 murB 1958357..1959376 (+) 1020 WP_347904895.1 UDP-N-acetylmuramate dehydrogenase -
  AABM54_RS08810 - 1959613..1960083 (+) 471 WP_347906154.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22915.09 Da        Isoelectric Point: 6.8768

>NTDB_id=973776 AABM54_RS08775 WP_347904890.1 1954853..1955488(+) (exbB) [Pseudomonas purpurea strain DGS26]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGSGMSTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=973776 AABM54_RS08775 WP_347904890.1 1954853..1955488(+) (exbB) [Pseudomonas purpurea strain DGS26]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCAATGGCGATTGTCGC
CGAGCGTCTCTGGACCCTGCGAGCCAGTCGTGTGACCCCGGAGCACTTGCTCGGGCAGGTCTGGGTATGGATCAAGGACA
AGCAGCTCAATAAAGACAAGCTCAAGGAACTGCGTGCCAACTCACCGTTGGGCGAGATCCTGGCGGCGGGCCTTGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAGGCTGCGGCCCGGGTGATCCACGAGCTCGAACGCTACAT
CAACGCGCTGGGCACCATTGCGGCCATGGCGCCGTTGCTTGGCTTGCTGGGCACGGTGCTGGGCATGATCGATATCTTCA
GTGCGTTCATGGGGTCGGGCATGAGTACCAACGCGGCCGTACTGGCCGGTGGTATTTCCAAAGCCCTGATCACCACGGCG
GCGGGCCTGATGGTCGGTATTCCGTCGGTGTTCTTCCACCGGTTCCTGCAACGGCGCATCGATGAACTCGTCGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGTGACGTTGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858

Multiple sequence alignment