Detailed information NTG0973760

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: AABM55_RS20355
• Genome accession: NZ_CP150917
• Coordinates: 4379374..4381608 (-)
• Length: 744 a.a.
• NCBI ID: WP_347927562.1
• Uniprot ID: -
• Organism: Pseudomonas helvetica strain DGS28
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4374374..4386608

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABM55_RS20320	murB	4374742..4375761 (-)	1020	WP_347927558.1	UDP-N-acetylmuramate dehydrogenase	-
AABM55_RS20325	-	4375758..4376222 (-)	465	WP_347927559.1	low molecular weight protein-tyrosine-phosphatase	-
AABM55_RS20330	kdsB	4376222..4376986 (-)	765	WP_103317684.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
AABM55_RS20335	-	4376983..4377168 (-)	186	WP_019689343.1	Trm112 family protein	-
AABM55_RS20340	lpxK	4377193..4378203 (-)	1011	WP_019689342.1	tetraacyldisaccharide 4'-kinase	-
AABM55_RS20345	-	4378203..4378631 (-)	429	WP_019689341.1	biopolymer transporter ExbD	-
AABM55_RS20350	exbB	4378628..4379263 (-)	636	WP_019689340.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
AABM55_RS20355	comA	4379374..4381608 (-)	2235	WP_347927562.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
AABM55_RS20360	-	4381744..4382259 (+)	516	WP_347927564.1	DUF2062 domain-containing protein	-
AABM55_RS20365	-	4382652..4383026 (+)	375	WP_347927566.1	DUF6124 family protein	-
AABM55_RS20370	-	4383339..4384118 (-)	780	WP_019689336.1	ABC transporter permease	-
AABM55_RS20375	-	4384115..4385047 (-)	933	WP_054593365.1	ABC transporter ATP-binding protein	-
AABM55_RS20380	-	4385181..4385804 (-)	624	WP_054593366.1	glutathione S-transferase family protein	-
AABM55_RS20385	-	4385850..4386509 (-)	660	WP_347927569.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81386.69 Da
• Isoelectric Point: 9.6308

>NTDB_id=973760 AABM55_RS20355 WP_347927562.1 4379374..4381608(-) (comA) [Pseudomonas helvetica strain DGS28]
MRTGMLALALGLLALRFLPVLPPVWLLLLLPVLALMLLPFRTYPLAFFLFGFSWACASAHWALADRLAPDLDGQTRWVEG
RVVGLPQNAQGVVRFELADSESRRTRLPGLMRLAWYDGPTVNSGERWRLAVKLKRPTGLLNPQGFDYDAWLLAQRIGATG
SVKDGQLLRPAQGAWRDAVRQRLLAVDAQGREGALAALVLGDGSGLSSEDWRALQDTGTVHLLVISGQHIGLLAGMVYLL
IAGLARYGLWPQRLPWLPWACGMAFAAALGYGLLAGFEVPVRRACVMIGLVLLWRLRFRHLGAWWPLLLALNTVLLLEPL
ASLQAGFWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPLLLILGLPISLSGPLTNLLAVPWISLVVLPPAL
LGTLLLPLPYIGEGLLWLAGGLLDVLFNGLALVAGRIPAWVAPVIPLWVWGISASGAFLLLLPKGLPMRLLGWPMLLLMV
LPPLRSVPDGMAEIWQLDVGQGLAIVVRTRHHTLLYDAGPRFGDFDLGERVVLPSLRKLGVRKLEVMLISHADADHAGGA
RSVARGLPVAQVLSGDPEALPAELYAQACESGQRWEWDGVGFTLWQWSGASESNQKSCVLQIEANGERLLLTGDIDAWAE
QALLESPLAVATDWLQAPHHGSRSSSSMAFLTALAPKAVLISRGHDNSFGHPHPQVLARYRKLGMQVYDSAEQGALRLRL
GAFEAPESLRQQPRFWRAPPLVSQ

Nucleotide

• Length: 2235 bp

>NTDB_id=973760 AABM55_RS20355 WP_347927562.1 4379374..4381608(-) (comA) [Pseudomonas helvetica strain DGS28]
ATGCGCACAGGGATGTTGGCGCTCGCGTTGGGTCTGTTGGCCTTGCGTTTTTTACCGGTGTTGCCACCGGTCTGGTTACT
GCTGTTGCTGCCCGTACTGGCATTGATGCTGTTGCCATTTCGCACGTACCCACTGGCGTTTTTTCTGTTCGGTTTCAGCT
GGGCGTGTGCCAGTGCGCACTGGGCCTTGGCGGATCGTTTGGCGCCGGACCTCGACGGGCAAACCCGCTGGGTCGAAGGA
CGAGTCGTCGGCTTGCCGCAGAACGCGCAAGGCGTGGTGCGTTTCGAGTTGGCCGATAGCGAATCGCGGCGCACACGCTT
GCCGGGTTTAATGCGATTGGCCTGGTACGACGGTCCGACGGTCAACAGCGGCGAGCGCTGGCGACTGGCGGTGAAATTGA
AGCGCCCCACAGGCCTGCTCAATCCGCAGGGCTTTGATTACGACGCTTGGCTGTTGGCACAACGCATCGGCGCGACGGGA
AGCGTCAAGGACGGGCAGTTGCTCCGGCCTGCACAAGGGGCTTGGCGTGATGCTGTTCGCCAGCGTTTGCTGGCGGTCGA
TGCACAAGGGCGAGAGGGGGCGTTGGCGGCGCTGGTGCTGGGCGACGGCTCTGGGTTGAGCAGCGAAGACTGGCGCGCGT
TGCAAGACACCGGCACCGTGCATTTGCTGGTGATCTCCGGGCAGCACATCGGTTTGCTGGCCGGAATGGTTTATCTGCTG
ATTGCCGGATTGGCGCGTTATGGATTGTGGCCGCAGAGATTGCCTTGGCTGCCGTGGGCCTGCGGCATGGCATTCGCGGC
GGCGCTCGGTTACGGGTTGCTCGCCGGTTTCGAGGTGCCGGTGCGCCGGGCCTGCGTGATGATCGGTCTGGTGCTGTTAT
GGCGCCTGCGGTTTCGTCATCTGGGGGCCTGGTGGCCTTTGCTGCTGGCGTTGAATACGGTGTTGTTGCTTGAGCCGTTG
GCCAGTTTGCAGGCGGGGTTCTGGTTGTCATTTGCAGCGGTGGCGGTGCTGATTTTTACCTTCGGCGGCCGTTTGGGCGC
CTGGCGCTGGTGGCAAACCTGGACGCGGGCGCAATGGCTGATCGCGATTGGCTTGTGTCCGTTGCTGCTGATACTCGGTT
TGCCCATCAGTCTCAGTGGCCCGTTGACCAATCTGCTGGCCGTGCCGTGGATCAGCCTGGTGGTGTTGCCCCCGGCTTTG
CTCGGGACGTTGCTGTTGCCGCTGCCTTATATCGGCGAGGGGCTGTTGTGGCTGGCCGGCGGCTTGCTTGACGTGCTGTT
CAACGGTCTGGCATTGGTGGCCGGGCGGATACCGGCATGGGTTGCCCCGGTGATTCCCCTTTGGGTCTGGGGGATAAGTG
CTTCGGGCGCTTTTCTGCTGTTGTTACCCAAAGGCCTGCCCATGCGGTTGTTGGGCTGGCCGATGCTGCTGTTGATGGTG
CTCCCGCCACTCAGATCCGTACCTGACGGCATGGCTGAAATCTGGCAACTGGACGTCGGCCAGGGCTTGGCCATTGTGGT
CCGCACGCGTCATCACACGTTGCTCTACGATGCTGGTCCGCGTTTCGGTGATTTCGATCTGGGCGAGCGGGTGGTGTTGC
CGTCGTTGCGCAAGCTCGGTGTGCGCAAGCTGGAGGTGATGTTGATCAGTCATGCCGATGCCGATCACGCCGGTGGCGCG
CGCTCGGTCGCACGCGGATTGCCGGTGGCGCAGGTGCTCAGCGGTGATCCCGAAGCCCTGCCGGCCGAGTTGTACGCGCA
GGCCTGCGAGAGCGGTCAGCGCTGGGAGTGGGACGGTGTGGGTTTTACGCTCTGGCAATGGTCCGGGGCGAGTGAGAGCA
ACCAGAAGTCCTGCGTCCTGCAGATCGAAGCCAACGGCGAGCGTCTGTTGTTGACTGGCGACATCGACGCCTGGGCCGAG
CAGGCGTTGCTGGAAAGTCCGCTGGCGGTCGCGACCGACTGGCTACAAGCGCCGCATCACGGCAGTCGCAGCTCATCGTC
GATGGCCTTTCTCACCGCGTTGGCACCCAAGGCTGTGTTGATTTCTCGTGGGCACGACAATTCGTTCGGTCATCCGCATC
CGCAAGTGCTGGCGCGTTATCGCAAGCTGGGTATGCAGGTTTATGACAGCGCCGAGCAGGGCGCCTTGCGTTTGCGTCTG
GGGGCGTTCGAGGCGCCCGAGTCACTGCGCCAGCAACCACGTTTCTGGCGTGCACCGCCGTTGGTCAGCCAATAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.657	96.102	0.602
comA	Ralstonia pseudosolanacearum GMI1000	34.088	100	0.384