Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AABM55_RS20350 Genome accession   NZ_CP150917
Coordinates   4378628..4379263 (-) Length   211 a.a.
NCBI ID   WP_019689340.1    Uniprot ID   A0A010ST93
Organism   Pseudomonas helvetica strain DGS28     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4373628..4384263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABM55_RS20315 - 4374135..4374605 (-) 471 WP_347927556.1 (2Fe-2S)-binding protein -
  AABM55_RS20320 murB 4374742..4375761 (-) 1020 WP_347927558.1 UDP-N-acetylmuramate dehydrogenase -
  AABM55_RS20325 - 4375758..4376222 (-) 465 WP_347927559.1 low molecular weight protein-tyrosine-phosphatase -
  AABM55_RS20330 kdsB 4376222..4376986 (-) 765 WP_103317684.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AABM55_RS20335 - 4376983..4377168 (-) 186 WP_019689343.1 Trm112 family protein -
  AABM55_RS20340 lpxK 4377193..4378203 (-) 1011 WP_019689342.1 tetraacyldisaccharide 4'-kinase -
  AABM55_RS20345 - 4378203..4378631 (-) 429 WP_019689341.1 biopolymer transporter ExbD -
  AABM55_RS20350 exbB 4378628..4379263 (-) 636 WP_019689340.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AABM55_RS20355 comA 4379374..4381608 (-) 2235 WP_347927562.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AABM55_RS20360 - 4381744..4382259 (+) 516 WP_347927564.1 DUF2062 domain-containing protein -
  AABM55_RS20365 - 4382652..4383026 (+) 375 WP_347927566.1 DUF6124 family protein -
  AABM55_RS20370 - 4383339..4384118 (-) 780 WP_019689336.1 ABC transporter permease -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23001.16 Da        Isoelectric Point: 6.8770

>NTDB_id=973759 AABM55_RS20350 WP_019689340.1 4378628..4379263(-) (exbB) [Pseudomonas helvetica strain DGS28]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMSTGMTTNAAVLAGGISKALITTA
SGLIVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=973759 AABM55_RS20350 WP_019689340.1 4378628..4379263(-) (exbB) [Pseudomonas helvetica strain DGS28]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCAATGGCGATCGTTGC
CGAGCGTCTCTGGACCTTGCGGGCCAGCCGTGTGACCCCGGAGCATTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTCAACAAGGAAAAACTCAAGGAACTGCGCGCCAACTCACCGTTGGGCGAGATCCTCGCCGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCCCGGGTGATCCACGAGCTGGAACGCTACAT
CAACGCGCTGGGCACCATCGCCGCCATGGCGCCGTTGCTCGGCCTGCTCGGCACGGTGTTGGGCATGATCGATATCTTCA
GTTCGTTCATGAGCACCGGCATGACCACCAACGCAGCGGTGCTGGCCGGCGGTATTTCCAAAGCCTTGATCACCACGGCT
TCAGGCCTGATCGTCGGTATCCCGTCGGTGTTCTTCCACCGGTTCCTGCAACGGCGCATCGATGAACTCGTCGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTTGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCTGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A010ST93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.412

100

0.834

Multiple sequence alignment