Detailed information NTG0973745

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: AABM55_RS03655
• Genome accession: NZ_CP150917
• Coordinates: 836454..837800 (-)
• Length: 448 a.a.
• NCBI ID: WP_347928852.1
• Uniprot ID: -
• Organism: Pseudomonas helvetica strain DGS28
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 831454..842800

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABM55_RS03640	-	831665..834826 (+)	3162	WP_347928850.1	PilC/PilY family type IV pilus protein	-
AABM55_RS03645	-	834842..835243 (+)	402	WP_054595524.1	type IV pilin protein	-
AABM55_RS03650	thiO	835301..836401 (+)	1101	WP_347928851.1	glycine oxidase ThiO	-
AABM55_RS03655	pilR	836454..837800 (-)	1347	WP_347928852.1	sigma-54 dependent transcriptional regulator	Regulator
AABM55_RS03660	pilS	837797..839386 (-)	1590	WP_347928853.1	ATP-binding protein	Regulator
AABM55_RS03665	-	839376..839609 (-)	234	WP_054595528.1	PP0621 family protein	-
AABM55_RS03670	-	839734..840750 (-)	1017	WP_054595529.1	outer membrane protein assembly factor BamD	-
AABM55_RS03675	rluD	840903..841865 (+)	963	WP_054595530.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
AABM55_RS03680	pgeF	841862..842587 (+)	726	WP_347928854.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 49893.45 Da
• Isoelectric Point: 7.4253

>NTDB_id=973745 AABM55_RS03655 WP_347928852.1 836454..837800(-) (pilR) [Pseudomonas helvetica strain DGS28]
MKTSPRQKVLIVDDEPDIRELLEITLGRMKLDTLSARNVGEARSLLAQERFDLCLTDMRLPDGTGLELVQHIQLTHPYVP
VAMITAYGSLDTAINALKAGAFDFLTKPVNLTRLRELVVSALRLPVAGDAASAIDRRLLGDSVPMRNLRTQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRSGQPFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAANGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRSIGGQQEAIINVRILCATHRDLDAEVAAGRFRQDLYYRLNVIELRVPPLRERRDDIELLA
SHVLKRLAAVSGLPAAHLQPQALDALKHYRFPGNVRELENMLERAYTLCENKQIEASDLRLTDGNCSADTGLPDLTKIDN
LEQYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=973745 AABM55_RS03655 WP_347928852.1 836454..837800(-) (pilR) [Pseudomonas helvetica strain DGS28]
TTGAAGACAAGCCCACGGCAAAAAGTCCTGATCGTCGATGACGAACCGGATATTCGCGAACTTCTGGAAATCACCCTCGG
CCGAATGAAACTCGATACGCTGAGCGCGCGTAATGTCGGCGAAGCGCGGTCGTTGCTGGCCCAGGAGCGGTTCGACCTGT
GCCTGACCGATATGCGGTTGCCCGACGGTACCGGCCTGGAGCTGGTGCAGCACATTCAGCTGACCCATCCCTACGTGCCT
GTGGCGATGATCACCGCTTATGGCAGCCTTGATACCGCCATCAACGCGCTGAAAGCCGGTGCCTTCGACTTCCTGACCAA
ACCGGTGAACCTCACCCGACTGCGCGAGCTGGTGGTCAGCGCCCTGCGCTTGCCGGTCGCGGGCGACGCTGCCAGTGCCA
TCGATCGCCGGCTGCTCGGCGACTCAGTGCCCATGCGCAACCTGCGCACACAAATTGACAAACTGGCGCGCAGCCAGGCA
CCGGTGTACATCAGCGGCGAATCCGGCAGTGGAAAGGAGCTGGTCGCCCGACTGATTCATGAACAAGGTCCACGCAGCGG
CCAGCCATTTGTGCCGGTCAACTGCGGGGCAATTCCGTCCGAATTGATGGAAAGCGAGTTTTTCGGTCATCGCAAAGGCA
GTTTCAGCGGCGCCATCGAAGACAAACCCGGGCTGTTCCAGGCGGCTAACGGTGGGACGTTGTTTCTCGATGAAGTGGCC
GACTTGCCGCTGGCGATGCAGGTCAAGTTGCTGCGCGCGATTCAGGAGAAGGCGGTACGCAGCATCGGCGGACAGCAGGA
AGCCATCATTAATGTGCGAATACTCTGTGCGACCCACAGGGATCTGGACGCCGAAGTGGCCGCTGGGCGCTTTCGGCAGG
ATTTGTACTATCGGCTGAATGTCATCGAGTTGCGCGTCCCGCCGCTACGCGAGCGCCGTGACGACATCGAGCTGCTGGCC
AGTCATGTACTCAAGCGTCTCGCGGCAGTCAGCGGCTTGCCGGCCGCCCATCTCCAGCCGCAAGCCCTCGATGCACTCAA
GCACTACCGTTTTCCGGGTAACGTCCGCGAGTTGGAGAACATGCTCGAACGCGCGTACACCCTGTGCGAAAACAAGCAGA
TCGAAGCCAGCGACCTGCGCCTGACTGATGGCAATTGCAGCGCCGACACCGGATTGCCGGACCTGACGAAAATCGACAAC
CTTGAGCAGTATCTGGAGAACGTCGAACGCAAACTGATTCTCCAGGCGCTCGAAGAAACCCGCTGGAACCGCACAGCGGC
GGCCCAACGGCTGAACCTGTCGTTTCGGTCAATGCGTTACCGACTGAAAAAGCTGGGGCTGGACTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.233	98.884	0.783
pilR	Acinetobacter baumannii strain A118	50.109	100	0.513