Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   AABD49_RS01850 Genome accession   NZ_CP150909
Coordinates   392724..393368 (-) Length   214 a.a.
NCBI ID   WP_069537160.1    Uniprot ID   A0AA47JFQ5
Organism   Vibrio parahaemolyticus strain vp-HL-202008     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 387724..398368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD49_RS01840 (AABD49_01840) uvrA 388634..391456 (-) 2823 WP_069537201.1 excinuclease ABC subunit UvrA -
  AABD49_RS01845 (AABD49_01845) galU 391594..392466 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  AABD49_RS01850 (AABD49_01850) qstR 392724..393368 (-) 645 WP_069537160.1 LuxR C-terminal-related transcriptional regulator Regulator
  AABD49_RS01855 (AABD49_01855) ssb 393647..394177 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  AABD49_RS01860 (AABD49_01860) csrD 394418..396427 (+) 2010 WP_069537162.1 RNase E specificity factor CsrD -
  AABD49_RS01865 (AABD49_01865) - 396439..397884 (+) 1446 WP_025535370.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24386.20 Da        Isoelectric Point: 8.7760

>NTDB_id=973675 AABD49_RS01850 WP_069537160.1 392724..393368(-) (qstR) [Vibrio parahaemolyticus strain vp-HL-202008]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVLNTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=973675 AABD49_RS01850 WP_069537160.1 392724..393368(-) (qstR) [Vibrio parahaemolyticus strain vp-HL-202008]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAGCGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGCTAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGTGAACTGCAA
GTGCTGCGTTGTCTGCAAGCCGGGGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTCAAAAAGCTCTCGGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

99.533

100

0.995
  qstR Vibrio campbellii strain DS40M4

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.093

100

0.523

Multiple sequence alignment