Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AABD47_RS02850 Genome accession   NZ_CP150902
Coordinates   582892..583410 (+) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain vp-HL-202006     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 577892..588410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD47_RS02840 (AABD47_02840) gshA 580627..582195 (+) 1569 WP_029800956.1 glutamate--cysteine ligase -
  AABD47_RS02845 (AABD47_02845) - 582220..582825 (+) 606 WP_175423209.1 hypothetical protein -
  AABD47_RS02850 (AABD47_02850) luxS 582892..583410 (+) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  AABD47_RS02855 (AABD47_02855) - 583472..584752 (-) 1281 WP_005462557.1 CNNM domain-containing protein -
  AABD47_RS02860 (AABD47_02860) - 584878..585672 (-) 795 WP_005462565.1 inner membrane protein YpjD -
  AABD47_RS02865 (AABD47_02865) ffh 585885..587267 (+) 1383 WP_005462555.1 signal recognition particle protein -
  AABD47_RS02870 (AABD47_02870) rpsP 587477..587725 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  AABD47_RS02875 (AABD47_02875) rimM 587754..588302 (+) 549 WP_047123098.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=973638 AABD47_RS02850 WP_005462534.1 582892..583410(+) (luxS) [Vibrio parahaemolyticus strain vp-HL-202006]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=973638 AABD47_RS02850 WP_005462534.1 582892..583410(+) (luxS) [Vibrio parahaemolyticus strain vp-HL-202006]
ATGCCTTTACTCGATAGCTTCACAGTAGACCACACTCGCATGAATGCGCCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCCAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCTGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment