Detailed information NTG0973519

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: WOB24_RS07070
• Genome accession: NZ_CP150891
• Coordinates: 1481900..1484110 (+)
• Length: 736 a.a.
• NCBI ID: WP_341305397.1
• Uniprot ID: -
• Organism: Pseudomonas sp. TMP25
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1476900..1489110

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WOB24_RS07040 (WOB24_07040)	-	1476976..1477278 (-)	303	WP_339082543.1	phosphodiesterase	-
WOB24_RS07045 (WOB24_07045)	-	1477291..1477872 (-)	582	WP_339082545.1	PilZ domain-containing protein	-
WOB24_RS07050 (WOB24_07050)	-	1477967..1479217 (+)	1251	WP_339082547.1	lipoprotein-releasing ABC transporter permease subunit	-
WOB24_RS07055 (WOB24_07055)	lolD	1479240..1479923 (+)	684	WP_339083448.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
WOB24_RS07060 (WOB24_07060)	-	1479923..1481167 (+)	1245	WP_341305072.1	lipoprotein-releasing ABC transporter permease subunit	-
WOB24_RS07065 (WOB24_07065)	-	1481225..1481752 (-)	528	WP_339082551.1	DUF2062 domain-containing protein	-
WOB24_RS07070 (WOB24_07070)	comA	1481900..1484110 (+)	2211	WP_341305397.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
WOB24_RS07075 (WOB24_07075)	exbB	1484183..1484815 (+)	633	WP_339082553.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
WOB24_RS07080 (WOB24_07080)	-	1484812..1485240 (+)	429	WP_322948974.1	biopolymer transporter ExbD	-
WOB24_RS07085 (WOB24_07085)	lpxK	1485254..1486255 (+)	1002	WP_341305073.1	tetraacyldisaccharide 4'-kinase	-
WOB24_RS07090 (WOB24_07090)	-	1486317..1486502 (+)	186	WP_339082559.1	Trm112 family protein	-
WOB24_RS07095 (WOB24_07095)	kdsB	1486503..1487267 (+)	765	WP_341305074.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
WOB24_RS07100 (WOB24_07100)	-	1487267..1487731 (+)	465	WP_341305075.1	low molecular weight protein-tyrosine-phosphatase	-
WOB24_RS07105 (WOB24_07105)	murB	1487728..1488762 (+)	1035	WP_341305076.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 736 a.a.
• Molecular weight: 79507.50 Da
• Isoelectric Point: 9.3810

>NTDB_id=973519 WOB24_RS07070 WP_341305397.1 1481900..1484110(+) (comA) [Pseudomonas sp. TMP25]
MFALLAGLLLLRFLPALPPLWLLILFPIAGLLLLPFRSYPIALFLFGFTWACVSAQWALDDRLAPSVDARTLWLQGQVVG
LPEVSGGVVRFELEQAVSRRELLPKRLRLSWYGGPAVHAGETWRLAVRLKRPHGLVNPQAFDYEAWLLTQRIGATGTVKS
GELLTPASGTGAWRDRLRQHLLATPAHGREGALAALVLGDGSGLSTADWQVLQNTGTVHLMVISGQHIGLLATLLYSLVA
GLARVGGWPRSWPWLPCACVLAFSGALAYGLLAGFEVPVQRACVMVGLVLLWRWRFRHLGVGLPVLLALLAVLLLEPLAS
LQPGFWLSFGAVALLILIFSGRLGVWPWWGTLLRAQWAMAIGLLPLLLALGLPVSASGPLANLVAVPVIGLLVVPLALLG
TLLLPVPGVEATLLGVAGWVLHLMFMLLSQLSVWLPAWLPSALPFWAWLLVALGALVLLLPAALPMRSLGALLLLPLLFS
PQQRPEYGRAEVWLLDVGQGLAVLVRTQQHDLLYDAGPRFGEFDTGERVVLPSLRALDVRGLDLLLLSHADNDHAGGAAA
IKRGLPVSRVVSGEPDNVAHSLQAQACKSEQWQWDGVAFSTWQWAGATDGNQASCVLLVEANGERLWLTGDIDSHAERAL
LNSTLLMPAQWLLAPHHGSRSSSSAALLAQVKPAAVLISRGAHNAFGHPHADVMGRYEAVAARAYDTAVQGALRIRLGAF
EPAQGLRNHARFWREK

Nucleotide

• Length: 2211 bp

>NTDB_id=973519 WOB24_RS07070 WP_341305397.1 1481900..1484110(+) (comA) [Pseudomonas sp. TMP25]
ATGTTTGCGTTATTGGCTGGGCTGCTGCTGTTACGCTTTCTTCCGGCCTTGCCGCCGTTGTGGCTGCTGATCCTCTTCCC
GATAGCTGGGCTGCTGCTGCTGCCGTTTCGCAGCTACCCCATCGCGTTATTCCTCTTCGGCTTTACTTGGGCTTGTGTGT
CAGCGCAGTGGGCGCTGGATGACCGCTTGGCGCCCTCAGTGGATGCCCGCACTCTCTGGCTGCAGGGGCAAGTGGTGGGC
CTGCCTGAGGTCAGTGGCGGTGTGGTGCGGTTCGAGCTGGAGCAGGCGGTTTCTCGCCGCGAGCTATTGCCCAAGCGTTT
ACGCCTCTCGTGGTATGGCGGGCCAGCTGTGCATGCGGGTGAGACGTGGCGCTTAGCGGTGCGCCTCAAACGTCCCCATG
GGTTGGTCAACCCGCAGGCCTTTGATTATGAAGCTTGGTTATTGACGCAGCGAATCGGGGCAACGGGGACGGTGAAAAGT
GGCGAGTTGCTGACCCCCGCTAGCGGGACGGGTGCGTGGCGTGACCGCTTGCGTCAGCACCTACTCGCCACTCCGGCGCA
TGGTCGTGAAGGCGCTTTGGCGGCCTTGGTACTGGGCGATGGTTCGGGATTATCCACGGCAGACTGGCAGGTTCTGCAAA
ACACTGGAACGGTGCACTTAATGGTGATCTCCGGCCAGCATATCGGTCTGTTAGCGACGCTTTTATATAGTCTGGTTGCT
GGTTTAGCGCGTGTTGGGGGGTGGCCGCGCAGTTGGCCTTGGTTGCCCTGCGCCTGTGTCTTGGCGTTTAGCGGTGCACT
GGCTTACGGCCTGCTGGCAGGTTTTGAAGTGCCGGTGCAGCGCGCCTGTGTGATGGTCGGCTTGGTGCTGCTGTGGCGCT
GGCGTTTTCGTCATTTGGGCGTGGGCTTGCCCGTGTTGTTGGCACTGCTAGCGGTGTTGCTGTTGGAGCCGTTGGCCAGT
TTGCAACCAGGGTTCTGGTTATCTTTTGGCGCAGTGGCGCTGCTTATTCTGATTTTTAGTGGCCGCTTGGGTGTTTGGCC
TTGGTGGGGCACTTTACTGCGAGCGCAGTGGGCCATGGCGATAGGGTTGCTGCCGTTATTGCTGGCGCTCGGCTTACCGG
TAAGTGCCAGCGGGCCGCTGGCCAACTTAGTGGCAGTGCCTGTAATCGGCTTGTTGGTGGTACCGCTGGCATTACTCGGC
ACGCTGCTGCTGCCCGTGCCTGGGGTGGAGGCTACCTTGCTCGGGGTCGCGGGATGGGTGCTGCATCTGATGTTTATGCT
GCTCAGCCAATTGTCTGTGTGGCTCCCTGCGTGGTTGCCCAGCGCGCTGCCTTTTTGGGCGTGGCTGCTGGTGGCGCTGG
GTGCGCTGGTATTGCTTCTGCCCGCAGCGCTGCCCATGCGCAGCTTAGGTGCGTTGCTGCTATTGCCGTTGTTATTTAGC
CCGCAACAACGTCCCGAATATGGCCGGGCCGAGGTGTGGCTATTGGACGTCGGCCAAGGCTTGGCCGTGCTGGTGCGCAC
CCAGCAGCATGATTTGCTGTATGACGCGGGTCCGCGGTTTGGTGAGTTCGATACGGGTGAGCGGGTGGTGTTGCCATCCT
TACGCGCACTGGATGTGCGTGGGCTTGATCTGTTGTTGCTCAGCCATGCCGACAACGATCATGCCGGTGGCGCTGCCGCC
ATCAAGCGTGGCTTACCTGTCAGTCGGGTGGTCAGTGGTGAACCCGATAACGTAGCGCATTCGCTGCAGGCCCAGGCCTG
TAAATCTGAGCAGTGGCAATGGGACGGAGTTGCCTTCAGCACTTGGCAATGGGCCGGTGCAACCGATGGTAACCAAGCGT
CTTGCGTATTGCTGGTAGAGGCCAATGGTGAGCGTCTGTGGTTGACTGGAGACATCGACAGTCATGCCGAGCGCGCTTTG
CTCAACAGTACTTTACTGATGCCGGCACAGTGGTTGCTAGCGCCGCATCATGGCAGCCGTAGCTCGTCTTCTGCTGCACT
ACTGGCGCAGGTTAAACCGGCCGCAGTGTTGATTTCTCGTGGCGCGCACAATGCCTTTGGTCATCCGCATGCTGACGTCA
TGGGGCGCTATGAGGCTGTTGCGGCGCGAGCTTATGACACCGCCGTGCAGGGTGCGCTGCGGATTCGCCTCGGCGCATTC
GAGCCCGCACAGGGTTTGCGTAATCACGCACGCTTTTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (17-163)

• Competence protein (Competence) (196-461)

• Metallo-beta-lactamase superfamily (Lactamase_B) (496-677)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	66.248	97.418	0.645
comA	Ralstonia pseudosolanacearum GMI1000	33.216	100	0.385