Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   WOB24_RS07075 Genome accession   NZ_CP150891
Coordinates   1484183..1484815 (+) Length   210 a.a.
NCBI ID   WP_339082553.1    Uniprot ID   -
Organism   Pseudomonas sp. TMP25     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1479183..1489815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WOB24_RS07055 (WOB24_07055) lolD 1479240..1479923 (+) 684 WP_339083448.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  WOB24_RS07060 (WOB24_07060) - 1479923..1481167 (+) 1245 WP_341305072.1 lipoprotein-releasing ABC transporter permease subunit -
  WOB24_RS07065 (WOB24_07065) - 1481225..1481752 (-) 528 WP_339082551.1 DUF2062 domain-containing protein -
  WOB24_RS07070 (WOB24_07070) comA 1481900..1484110 (+) 2211 WP_341305397.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  WOB24_RS07075 (WOB24_07075) exbB 1484183..1484815 (+) 633 WP_339082553.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  WOB24_RS07080 (WOB24_07080) - 1484812..1485240 (+) 429 WP_322948974.1 biopolymer transporter ExbD -
  WOB24_RS07085 (WOB24_07085) lpxK 1485254..1486255 (+) 1002 WP_341305073.1 tetraacyldisaccharide 4'-kinase -
  WOB24_RS07090 (WOB24_07090) - 1486317..1486502 (+) 186 WP_339082559.1 Trm112 family protein -
  WOB24_RS07095 (WOB24_07095) kdsB 1486503..1487267 (+) 765 WP_341305074.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  WOB24_RS07100 (WOB24_07100) - 1487267..1487731 (+) 465 WP_341305075.1 low molecular weight protein-tyrosine-phosphatase -
  WOB24_RS07105 (WOB24_07105) murB 1487728..1488762 (+) 1035 WP_341305076.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22831.03 Da        Isoelectric Point: 9.1188

>NTDB_id=973520 WOB24_RS07075 WP_339082553.1 1484183..1484815(+) (exbB) [Pseudomonas sp. TMP25]
MWELVKAGGWIMLPIILCSIAAAGIIAERLWTLRPSRITPPNLLGQVWKWIKEKKLNNQKLKELRANSPLGQILAAGLAN
SKHGREIMKECIQEAAARVVHDLERYLNALGTIAGIAPLLGLLGTVLGMIEIFSSFMGSGMANAGLLASGISKALITTAA
GLMVAIPALFFHRYLQRRVDELVVGMEQEAIRLVEVVQGDRDVDLGEDKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=973520 WOB24_RS07075 WP_339082553.1 1484183..1484815(+) (exbB) [Pseudomonas sp. TMP25]
GTGTGGGAACTGGTAAAAGCTGGCGGCTGGATCATGCTGCCGATCATTCTGTGTTCCATCGCTGCGGCCGGCATTATTGC
CGAGCGCCTATGGACGCTGCGGCCGAGCCGCATCACCCCACCCAATCTGCTCGGGCAGGTATGGAAGTGGATCAAAGAGA
AAAAACTGAATAACCAAAAGCTTAAAGAGCTGCGCGCGAACTCGCCGCTGGGGCAAATTCTTGCTGCTGGCCTGGCTAAC
TCCAAACACGGTCGCGAGATCATGAAGGAGTGCATTCAGGAAGCTGCCGCTCGAGTCGTTCATGACTTAGAGCGCTATCT
CAATGCGCTTGGCACCATCGCCGGCATCGCGCCGCTGCTGGGTTTGCTCGGCACCGTACTGGGCATGATCGAAATTTTCA
GCTCCTTTATGGGCTCCGGTATGGCCAACGCGGGATTACTGGCCAGCGGTATTTCCAAGGCGCTGATCACCACCGCAGCA
GGTCTGATGGTGGCCATTCCTGCCTTGTTCTTTCACCGCTACCTGCAGCGCAGGGTTGATGAGCTGGTGGTGGGCATGGA
GCAGGAAGCGATTCGCCTGGTTGAAGTGGTACAGGGTGATCGTGATGTTGATTTGGGTGAGGATAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

90.952

100

0.91

Multiple sequence alignment