Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   WMY90_RS05445 Genome accession   NZ_CP150875
Coordinates   1066596..1067633 (-) Length   345 a.a.
NCBI ID   WP_022096673.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain TCI125     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1061596..1072633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMY90_RS05420 (WMY90_05420) ilvD 1061848..1063551 (-) 1704 WP_014727663.1 dihydroxy-acid dehydratase -
  WMY90_RS05425 (WMY90_05425) - 1063679..1064860 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  WMY90_RS05435 (WMY90_05435) trmB 1065096..1065737 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  WMY90_RS05440 (WMY90_05440) - 1065747..1066538 (-) 792 WP_002951667.1 phosphotransferase family protein -
  WMY90_RS05445 (WMY90_05445) pptB 1066596..1067633 (-) 1038 WP_022096673.1 ABC transporter permease Regulator
  WMY90_RS05450 (WMY90_05450) pptA 1067630..1068361 (-) 732 WP_002947523.1 ABC transporter ATP-binding protein Regulator
  WMY90_RS05455 (WMY90_05455) - 1068426..1068845 (+) 420 WP_002891660.1 HIT family protein -
  WMY90_RS05460 (WMY90_05460) - 1068842..1069150 (+) 309 WP_341276258.1 hypothetical protein -
  WMY90_RS05465 (WMY90_05465) - 1069702..1069923 (-) 222 WP_002947520.1 hypothetical protein -
  WMY90_RS05470 (WMY90_05470) - 1069942..1070577 (-) 636 WP_022096674.1 DUF4230 domain-containing protein -
  WMY90_RS05475 (WMY90_05475) - 1070596..1070721 (-) 126 WP_011681534.1 hypothetical protein -
  WMY90_RS05480 (WMY90_05480) - 1070933..1072108 (-) 1176 WP_111679259.1 IS256-like element IS1191 family transposase -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 40239.81 Da        Isoelectric Point: 10.5363

>NTDB_id=973229 WMY90_RS05445 WP_022096673.1 1066596..1067633(-) (pptB) [Streptococcus thermophilus strain TCI125]
MIAELFKERSRRFTTRCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLE
PADKHYLLVKEEEVLDHIKKATGCAFRFWVLIQTLIFILVVPLFLALGLPVWRVVLVAVAMAILKYFIFQKKAQPFYKQS
GLNWTDAIAAENKRQQSILKFFSLFTNVKGITSSVKRRGYLDGILKRTKKEKKYTWYNLYLRAFLRSGDYFALSLRLFAL
TLLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPIGKDMQVNNLKRLINQIVLVMTLIQALCLFDLKF
SLILVGVMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=973229 WMY90_RS05445 WP_022096673.1 1066596..1067633(-) (pptB) [Streptococcus thermophilus strain TCI125]
ATGATAGCTGAGCTTTTTAAGGAGCGTAGCAGACGATTCACTACCCGTTGTGCTAAGTATAGTCGCTACGTCTTTAATGA
CCACTTTATCCTGGTTCTTCTTTTTTTGCTGGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTCCGACATTTTCCAAAGA
ATCCATGGGCCATCATTCTTGGCTTACTTGTGCTTTGTCTCTTACTGCCTTTTTGGGGCAATATTGCCACCTATTTAGAG
CCTGCAGACAAGCACTACCTCTTAGTTAAGGAAGAAGAGGTGCTAGACCATATTAAGAAGGCGACAGGGTGTGCTTTTAG
ATTTTGGGTGCTCATCCAGACCTTGATTTTTATCTTGGTCGTCCCACTCTTTCTGGCCTTGGGTCTTCCAGTTTGGAGAG
TTGTCCTTGTAGCCGTGGCTATGGCTATTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCTTTTTATAAGCAGTCT
GGGTTGAATTGGACTGATGCTATTGCAGCAGAGAATAAACGACAACAATCAATCTTGAAGTTTTTCTCACTTTTTACCAA
TGTTAAGGGAATTACATCGAGTGTTAAACGCCGTGGCTATTTGGATGGCATTCTCAAGCGTACAAAGAAAGAGAAGAAAT
ATACGTGGTACAACCTGTACCTGAGAGCCTTCTTACGTTCAGGAGATTACTTTGCCCTTAGCCTACGCCTTTTTGCTTTA
ACACTTTTGGTTATTTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTACTTGTGGTTGTTTTTGACTATCTCTTACTCTT
CCAGCTCACAGCGCTTAAATCGCACTTTGCTTACCAAAGGATGGCCAACCTTATGCCAATTGGAAAAGACATGCAGGTGA
ACAATCTTAAGCGCTTGATTAATCAAATTGTCCTTGTAATGACACTGATTCAGGCTCTTTGTCTCTTTGACCTTAAATTT
AGCCTGATTTTGGTTGGAGTTATGCTAGTTTTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

97.674

99.71

0.974

  pptB Streptococcus salivarius strain HSISS4

92.151

99.71

0.919


Multiple sequence alignment