Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   WMY90_RS05450 Genome accession   NZ_CP150875
Coordinates   1067630..1068361 (-) Length   243 a.a.
NCBI ID   WP_002947523.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain TCI125     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1062630..1073361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMY90_RS05425 (WMY90_05425) - 1063679..1064860 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  WMY90_RS05435 (WMY90_05435) trmB 1065096..1065737 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  WMY90_RS05440 (WMY90_05440) - 1065747..1066538 (-) 792 WP_002951667.1 phosphotransferase family protein -
  WMY90_RS05445 (WMY90_05445) pptB 1066596..1067633 (-) 1038 WP_022096673.1 ABC transporter permease Regulator
  WMY90_RS05450 (WMY90_05450) pptA 1067630..1068361 (-) 732 WP_002947523.1 ABC transporter ATP-binding protein Regulator
  WMY90_RS05455 (WMY90_05455) - 1068426..1068845 (+) 420 WP_002891660.1 HIT family protein -
  WMY90_RS05460 (WMY90_05460) - 1068842..1069150 (+) 309 WP_341276258.1 hypothetical protein -
  WMY90_RS05465 (WMY90_05465) - 1069702..1069923 (-) 222 WP_002947520.1 hypothetical protein -
  WMY90_RS05470 (WMY90_05470) - 1069942..1070577 (-) 636 WP_022096674.1 DUF4230 domain-containing protein -
  WMY90_RS05475 (WMY90_05475) - 1070596..1070721 (-) 126 WP_011681534.1 hypothetical protein -
  WMY90_RS05480 (WMY90_05480) - 1070933..1072108 (-) 1176 WP_111679259.1 IS256-like element IS1191 family transposase -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26760.94 Da        Isoelectric Point: 4.3974

>NTDB_id=973230 WMY90_RS05450 WP_002947523.1 1067630..1068361(-) (pptA) [Streptococcus thermophilus strain TCI125]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQDPASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKANGKSILMSTHVLDSAEKMCDRFVILHHGQILAQGTIDELSQTFGDSSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=973230 WMY90_RS05450 WP_002947523.1 1067630..1068361(-) (pptA) [Streptococcus thermophilus strain TCI125]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTACGCTAATATTCCCGTCCTAAAAGATGTCACTTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGGAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCCT
ATGGAGGACAGATTGCCATTGATGGGTTAACTATTCAACAAGATCCAGCTAGCTATCGTCAGAAGATTGGCTATATTCCT
GAAACGCCAAGTCTTTATGAAGAATTGACGCTTCGTGAACATTTGGAAACGGTGTTGATGGCCTATGGTCTTGATGTGAC
TGAGGGTATGGCACGTGCGGACAAGTACCTCAAACTCTTTCGCTTAGATGAAAAGTTGGACTGGTTCCCGACTCAGTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCCTTTATTGTAAATCCAAGTCTTTTCATTGTTGATGAGCCCTTT
TTGGGATTGGATCCCTTGGCGATTTCTGATTTGATTGAGCTTCTGGCTGAGGAAAAAGCCAATGGCAAGTCTATTCTCAT
GTCGACTCACGTTTTGGATTCAGCTGAGAAGATGTGTGATCGCTTTGTGATTTTGCACCATGGACAGATCTTGGCACAGG
GGACGATTGATGAGCTTAGTCAGACCTTTGGTGACAGTAGTGCTAGTCTTAACGATATCTATATGCAGTTGACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

99.588

100

0.996
  pptA Streptococcus salivarius strain HSISS4

96.708

100

0.967

Multiple sequence alignment