Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AABD50_RS15255 Genome accession   NZ_CP150862
Coordinates   3263282..3264805 (-) Length   507 a.a.
NCBI ID   WP_157625589.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain vp-201911     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3258282..3269805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD50_RS15235 (AABD50_15235) - 3259564..3260550 (+) 987 WP_169608595.1 serine/threonine protein kinase -
  AABD50_RS15240 (AABD50_15240) - 3260585..3261187 (+) 603 WP_005454748.1 thiol:disulfide interchange protein DsbA/DsbL -
  AABD50_RS15245 (AABD50_15245) - 3261229..3262098 (-) 870 WP_346330374.1 acyltransferase -
  AABD50_RS15250 (AABD50_15250) - 3262269..3263225 (+) 957 WP_169608561.1 DUF2860 domain-containing protein -
  AABD50_RS15255 (AABD50_15255) comM 3263282..3264805 (-) 1524 WP_157625589.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AABD50_RS15260 (AABD50_15260) ilvG 3265270..3266916 (+) 1647 WP_029804259.1 acetolactate synthase 2 catalytic subunit -
  AABD50_RS15265 (AABD50_15265) ilvM 3266927..3267211 (+) 285 WP_005378958.1 acetolactate synthase 2 small subunit -
  AABD50_RS15270 (AABD50_15270) ilvE 3267224..3268162 (+) 939 WP_031847065.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55008.03 Da        Isoelectric Point: 8.4861

>NTDB_id=973149 AABD50_RS15255 WP_157625589.1 3263282..3264805(-) (comM) [Vibrio parahaemolyticus strain vp-201911]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDRLKNYEFVGELALSGGLRPVKGVLPAALAASKVGRHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLYQTPKRKTVEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKSRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPSLPKGTLAEGGDR
GEPTELVKERVSLARESMLNRNGKVNALLGSREIEAFCPLQKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAEQ
IERSHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=973149 AABD50_RS15255 WP_157625589.1 3263282..3264805(-) (comM) [Vibrio parahaemolyticus strain vp-201911]
ATGGGGCTGGCAATCATTCATAGTCGGGCAAGTGTCGGGGTGCAAGCGCCGTCAGTTAGTGTGGAAGTGCATATCAGTAA
TGGCATGCCCGGCTTTACTCTCGTTGGGTTGCCGGAGACTACGGTAAAGGAATCCAAAGATCGTGTACGCAGTGCGATCA
TCAATTCAAATTTCCAGTTTCCAGCCAAGCGCATTACGGTCAATTTGGCCCCAGCGGATTTACCTAAAGAAGGCGGACGT
TTTGATTTGCCTATTGCATTGGGTATTTTGGCGGCTTCAGAGCAAATCGCGACAGATAGGCTCAAAAACTACGAATTTGT
TGGCGAATTAGCCCTGTCTGGAGGATTAAGACCTGTCAAAGGTGTGCTTCCTGCCGCGTTGGCTGCAAGCAAAGTAGGAC
GTCATTTGGTGGTGCCTCATGTCAATGGCGATCAAGCGGCGCTGGTGGGCAAAGAGCAACATAAGTCAGCGCAATCCTTA
CTTGAGGTGTGTGCGGAGTTATGTGGTCAGCATCGTCTCAATCTTTATCAAACTCCGAAGCGAAAAACGGTTGAAAAGCA
TGGTCGAGATCTACAAGACATCATTGGCCAGCAACAAGGCAAGCGTGCTCTAGAAATTGCGGCGGCTGGAAACCACAACC
TACTTTTTCTTGGTCCTCCTGGTACAGGAAAAACCATGCTGGCGTCGCGTTTATGCGACTTACTGCCGGAGATGAGCGAC
GAAGAAGCGATGGAAACGGCTTCAGTCGCATCACTGACGCAAAGTGAGATTAATGAGCACAACTGGAAGTCGCGTCCGTT
TCGTTCGCCGCACCATTCCAGTTCGATGGCGGCATTAGTTGGTGGTGGCTCGGTGCCAAGACCGGGAGAGATTTCTTTGG
CTCACAATGGGTTATTGTTCCTTGATGAAATGCCGGAGTTTGACCGTAAAGTGTTGGACTCGTTACGAGAACCATTGGAA
TCGGGTGAGATCATCATTTCGCGCGCGCAGGGTAAAACGCGTTTTCCTGCTCGTTTTCAGCTGGTGGGCGCGTTGAATCC
AAGCCCAACTGGCTATTACGAAGGGAATCAAGCTCGCACTAACCCTCAAGCTATTTTGCGTTACTTAGGTCGTTTATCGG
GACCGCTTCTCGACCGTTTTGATATGTCGTTAGAAATTCCATCCTTACCGAAAGGCACGTTGGCGGAAGGTGGTGATCGA
GGAGAGCCCACGGAACTCGTCAAAGAGCGCGTCAGTCTTGCTCGCGAGAGCATGCTCAATCGAAACGGCAAAGTCAACGC
ACTGCTCGGCAGCCGTGAGATTGAGGCATTTTGCCCGTTGCAAAAAAGCGATGCGGAATTTCTCGAAACTGCACTGCATC
GGCTGGGGTTATCGATTCGTGCCTATCATCGCATCATTAAAGTGGCCCGCACGATAGCGGATTTAGAAGGTGCTGAGCAG
ATTGAACGTTCTCATTTAGCGGAAGCGCTCGGGTATCGCGCGATGGACCGATTGCTGAAACAACTTACGGCTCAAGCCGT
GTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

94.083

100

0.941
  comM Vibrio cholerae strain A1552

84.615

100

0.846
  comM Haemophilus influenzae Rd KW20

66.075

100

0.661
  comM Glaesserella parasuis strain SC1401

64.51

100

0.649
  comM Legionella pneumophila str. Paris

49.597

97.83

0.485
  comM Legionella pneumophila strain ERS1305867

49.597

97.83

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.291

100

0.444

Multiple sequence alignment