Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AABD50_RS14545 Genome accession   NZ_CP150862
Coordinates   3116011..3116736 (+) Length   241 a.a.
NCBI ID   WP_169609445.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain vp-201911     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3111011..3121736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD50_RS14530 (AABD50_14530) - 3112116..3114437 (+) 2322 WP_169609447.1 Tex family protein -
  AABD50_RS14535 (AABD50_14535) - 3114571..3115035 (-) 465 WP_005459035.1 hypothetical protein -
  AABD50_RS14540 (AABD50_14540) bioH 3115159..3115926 (-) 768 WP_069515734.1 pimeloyl-ACP methyl ester esterase BioH -
  AABD50_RS14545 (AABD50_14545) comF 3116011..3116736 (+) 726 WP_169609445.1 phosphoribosyltransferase family protein Machinery gene
  AABD50_RS14550 (AABD50_14550) nfuA 3116834..3117418 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  AABD50_RS14555 (AABD50_14555) nudE 3117639..3118208 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  AABD50_RS14560 (AABD50_14560) cysQ 3118249..3119076 (+) 828 WP_169609442.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AABD50_RS14565 (AABD50_14565) - 3119363..3120124 (-) 762 WP_169609440.1 type II secretion system protein N -
  AABD50_RS14570 (AABD50_14570) - 3120126..3120617 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27780.94 Da        Isoelectric Point: 8.8553

>NTDB_id=973147 AABD50_RS14545 WP_169609445.1 3116011..3116736(+) (comF) [Vibrio parahaemolyticus strain vp-201911]
MLSHHWQNIMHRVLSSQCGLCRFPIQATAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQIWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLADHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKHNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=973147 AABD50_RS14545 WP_169609445.1 3116011..3116736(+) (comF) [Vibrio parahaemolyticus strain vp-201911]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TACCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCCTAAAAGCTGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCCCCTTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAATATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGATCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGCATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.614

100

0.726
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485

Multiple sequence alignment