Detailed information NTG0973080

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AABD48_RS03015
• Genome accession: NZ_CP150857
• Coordinates: 612272..613141 (-)
• Length: 289 a.a.
• NCBI ID: WP_031855539.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain vp-201806
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 607272..618141

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABD48_RS02980 (AABD48_02980)	rpsP	608263..608511 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
AABD48_RS02985 (AABD48_02985)	rimM	608540..609088 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
AABD48_RS02990 (AABD48_02990)	trmD	609116..609859 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
AABD48_RS02995 (AABD48_02995)	rplS	609901..610254 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
AABD48_RS03000 (AABD48_03000)	yacG	610626..610820 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
AABD48_RS03005 (AABD48_03005)	zapD	610889..611629 (-)	741	WP_023624252.1	cell division protein ZapD	-
AABD48_RS03010 (AABD48_03010)	coaE	611657..612271 (-)	615	WP_005480887.1	dephospho-CoA kinase	-
AABD48_RS03015 (AABD48_03015)	pilD	612272..613141 (-)	870	WP_031855539.1	A24 family peptidase	Machinery gene
AABD48_RS03020 (AABD48_03020)	pilC	613206..614429 (-)	1224	WP_023585959.1	type II secretion system F family protein	Machinery gene
AABD48_RS03025 (AABD48_03025)	pilB	614454..616139 (-)	1686	WP_031855538.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AABD48_RS03030 (AABD48_03030)	pilA	616139..616567 (-)	429	WP_009698754.1	pilin	Machinery gene
AABD48_RS03035 (AABD48_03035)	nadC	616832..617719 (-)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32419.51 Da
• Isoelectric Point: 7.1972

>NTDB_id=973080 AABD48_RS03015 WP_031855539.1 612272..613141(-) (pilD) [Vibrio parahaemolyticus strain vp-201806]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQEAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=973080 AABD48_RS03015 WP_031855539.1 612272..613141(-) (pilD) [Vibrio parahaemolyticus strain vp-201806]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTACTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGATATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGAAGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCCGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTAGTCCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGGTGGGTGAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTTACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.927	100	0.889
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45