Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AABD48_RS03020 Genome accession   NZ_CP150857
Coordinates   613206..614429 (-) Length   407 a.a.
NCBI ID   WP_023585959.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain vp-201806     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 608206..619429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD48_RS02980 (AABD48_02980) rpsP 608263..608511 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  AABD48_RS02985 (AABD48_02985) rimM 608540..609088 (+) 549 WP_005462552.1 ribosome maturation factor RimM -
  AABD48_RS02990 (AABD48_02990) trmD 609116..609859 (+) 744 WP_005462562.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  AABD48_RS02995 (AABD48_02995) rplS 609901..610254 (+) 354 WP_005462554.1 50S ribosomal protein L19 -
  AABD48_RS03000 (AABD48_03000) yacG 610626..610820 (-) 195 WP_005462546.1 DNA gyrase inhibitor YacG -
  AABD48_RS03005 (AABD48_03005) zapD 610889..611629 (-) 741 WP_023624252.1 cell division protein ZapD -
  AABD48_RS03010 (AABD48_03010) coaE 611657..612271 (-) 615 WP_005480887.1 dephospho-CoA kinase -
  AABD48_RS03015 (AABD48_03015) pilD 612272..613141 (-) 870 WP_031855539.1 A24 family peptidase Machinery gene
  AABD48_RS03020 (AABD48_03020) pilC 613206..614429 (-) 1224 WP_023585959.1 type II secretion system F family protein Machinery gene
  AABD48_RS03025 (AABD48_03025) pilB 614454..616139 (-) 1686 WP_031855538.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AABD48_RS03030 (AABD48_03030) pilA 616139..616567 (-) 429 WP_009698754.1 pilin Machinery gene
  AABD48_RS03035 (AABD48_03035) nadC 616832..617719 (-) 888 WP_015297249.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AABD48_RS03040 (AABD48_03040) ampD 617812..618363 (+) 552 WP_025637088.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45223.41 Da        Isoelectric Point: 10.3996

>NTDB_id=973081 AABD48_RS03020 WP_023585959.1 613206..614429(-) (pilC) [Vibrio parahaemolyticus strain vp-201806]
MKTTTPQLKNFRWKGVNSSGKKTSGQTLAMSEIEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGKDITVFTRQISTML
VTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAMRTASNHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVILVALGVSFIMLTKVIPEFEKMFVGFGAELPWFTRQVLDLSAWTQNWSPFIALGSISVFISA
RVLSMRSDSFRLMLNRSVLKFPVLGAVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=973081 AABD48_RS03020 WP_023585959.1 613206..614429(-) (pilC) [Vibrio parahaemolyticus strain vp-201806]
ATGAAAACTACGACACCACAATTAAAGAACTTCCGTTGGAAAGGCGTCAACAGCTCAGGGAAAAAGACCTCTGGTCAAAC
TCTGGCAATGAGCGAAATCGAAGTACGAGAGCGCTTAGATGCCCAGCACATCAAAATCAAAAAGCTAAAGAAAAGCAGCA
TCTCTTTTTTGACCAAACTTAGCCATCGCGTAAAAGGGAAAGACATCACGGTTTTCACTCGTCAAATCTCAACGATGCTG
GTAACCGGTGTGCCGCTAGTACAAGCATTGAAATTGGTCTCTGATAACCACAAAAAAGCGGAAATGAAATCCATTTTGAT
GAGTGTAACTCGGGCTGTTGAAGCGGGTACGCCGATGTCCAAAGCGATGCGTACCGCCAGTAACCATTTTGACCCGCTGT
ATACCGACCTGATTGCGACAGGAGAACAATCGGGCAACTTAGCCGAAGTGTTCGAACGCTTAGCCACCTACAGGGAAAAA
AATGAGCAGCTTAGAGCCAAAGTGATCAAGGCTCTAATATATCCAGCCATGGTTATTCTAGTTGCACTGGGCGTATCGTT
TATCATGCTAACCAAGGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGCTTTGGCGCTGAATTGCCATGGTTTACAAGGC
AAGTCTTAGATCTTTCCGCTTGGACACAAAACTGGAGCCCATTTATCGCACTTGGCTCCATCAGTGTATTTATCTCCGCG
AGAGTACTCTCTATGCGTTCTGACTCTTTTCGCTTAATGCTCAACCGCTCTGTGCTTAAGTTTCCAGTCCTTGGGGCAGT
TTTATCGAAAGCCGCTATCGCAAAATTTAGTCGAACCCTCGCTACGAGCTTTACGGCGGGCATTCCGATTTTAACCAGTT
TAAAAACCACCTCGAAAACGTCCGGAAATATGCATTATCAATTGGCTATCGAAGAGGTTTATCGCGATACCGCAGCAGGA
ATGCCGATGTATGTTGCAATGCGCAATTGCAACGTGTTCCCTGAGTTGGTGCTGCAAATGGTTATGATCGGCGAAGAATC
CGGCCGACTTGACGATATGCTCAATAAAGTCGCCACAATTTACGAGTTTGAAGTGGACAACACCGTCGATAACCTCAGTA
AAATCTTAGAACCATTAATTATCGTTTTTTTAGGTATCGTTGTCGGTGGCCTGGTCACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

85.995

100

0.86
  pilC Vibrio cholerae strain A1552

74.074

99.509

0.737
  pilC Acinetobacter baylyi ADP1

42.5

98.28

0.418
  pilC Acinetobacter baumannii D1279779

41.191

99.017

0.408
  pilC Legionella pneumophila strain ERS1305867

40.342

100

0.405
  pilG Neisseria gonorrhoeae MS11

40.494

99.509

0.403
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398
  pilG Neisseria meningitidis 44/76-A

39.901

99.754

0.398

Multiple sequence alignment