Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AABD48_RS01945 | Genome accession | NZ_CP150857 |
| Coordinates | 410688..411215 (+) | Length | 175 a.a. |
| NCBI ID | WP_025592225.1 | Uniprot ID | A0A7Y0XCG9 |
| Organism | Vibrio parahaemolyticus strain vp-201806 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 405688..416215
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AABD48_RS01935 (AABD48_01935) | galU | 408635..409507 (-) | 873 | WP_005466627.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| AABD48_RS01940 (AABD48_01940) | qstR | 409765..410409 (-) | 645 | WP_005480993.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| AABD48_RS01945 (AABD48_01945) | ssb | 410688..411215 (+) | 528 | WP_025592225.1 | single-stranded DNA-binding protein | Machinery gene |
| AABD48_RS01950 (AABD48_01950) | csrD | 411456..413465 (+) | 2010 | WP_011106082.1 | RNase E specificity factor CsrD | - |
| AABD48_RS01955 (AABD48_01955) | - | 413477..414922 (+) | 1446 | WP_031855948.1 | hypothetical protein | - |
| AABD48_RS01960 (AABD48_01960) | gspM | 414919..415569 (+) | 651 | WP_031855949.1 | type II secretion system protein GspM | - |
| AABD48_RS01965 (AABD48_01965) | - | 415562..415891 (+) | 330 | WP_005481006.1 | MSHA biogenesis protein MshK | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19435.49 Da Isoelectric Point: 4.9269
>NTDB_id=973072 AABD48_RS01945 WP_025592225.1 410688..411215(+) (ssb) [Vibrio parahaemolyticus strain vp-201806]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQQ
QYNEPPMDFDDDIPF
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQQ
QYNEPPMDFDDDIPF
Nucleotide
Download Length: 528 bp
>NTDB_id=973072 AABD48_RS01945 WP_025592225.1 410688..411215(+) (ssb) [Vibrio parahaemolyticus strain vp-201806]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAGTACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAGCAGCAAGGCGGTT
GGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAGCAG
CAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAA
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAGTACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAGCAGCAAGGCGGTT
GGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAGCAG
CAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
81.006 |
100 |
0.829 |
| ssb | Glaesserella parasuis strain SC1401 |
57.447 |
100 |
0.617 |
| ssb | Neisseria meningitidis MC58 |
48.023 |
100 |
0.486 |
| ssb | Neisseria gonorrhoeae MS11 |
48.023 |
100 |
0.486 |